PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00175.1.g00440.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 249aa    MW: 26322.6 Da    PI: 8.5701
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00175.1.g00440.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171462148
                                    TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                    rg+W++eEde l  +v+++G+g +W + +++ g++R++k+c++rw++yl
  Zmw_sc00175.1.g00440.1.sm.mkhc 14 RGPWSPEEDEALRSYVQRHGSGgNWIALPKKAGLKRCGKSCRLRWLNYL 62
                                    89*********************************************97 PP

2Myb_DNA-binding45.12.3e-1469111246
                                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                     g +T+eEd  +v +  qlG++ W++Ia+ +  gRt++++k++w++
  Zmw_sc00175.1.g00440.1.sm.mkhc  69 GGFTEEEDAVIVSLYSQLGSK-WSLIASQLE-GRTDNDVKNYWNT 111
                                     569******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.509962IPR017930Myb domain
SuperFamilySSF466893.1E-2812109IPR009057Homeodomain-like
SMARTSM007172.5E-121364IPR001005SANT/Myb domain
PfamPF002492.2E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-241569IPR009057Homeodomain-like
CDDcd001676.08E-101662No hitNo description
PROSITE profilePS5129422.42163117IPR017930Myb domain
SMARTSM007177.8E-1267115IPR001005SANT/Myb domain
PfamPF002493.1E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-2370117IPR009057Homeodomain-like
CDDcd001673.13E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRTPCCDRT AVKRGPWSPE EDEALRSYVQ RHGSGGNWIA LPKKAGLKRC GKSCRLRWLN  60
YLRPDIRHGG FTEEEDAVIV SLYSQLGSKW SLIASQLEGR TDNDVKNYWN TKLKKRLAAA  120
ALSVSTPSPP PLARPPVPTP AASHTSTSLF PSIAIPSVKT KTYTCDDFLA PAAFIRDTSL  180
ASGGGSTPPS AASSASTWST DNGAAAAAAA ADGFLLDFCG GSSTDLGASG QLELPGGYYY  240
PLDPSLSLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-24141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968503.11e-119transcription factor RAX2
SwissprotQ9SJL72e-67RAX2_ARATH; Transcription factor RAX2
TrEMBLA0A3L6SQD01e-118A0A3L6SQD0_PANMI; Transcription factor RAX2-like
STRINGSi002629m1e-118(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Publications ? help Back to Top
  1. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]