PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00174.1.g00390.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HB-other

Protein Properties

Length: 318aa MW: 33875.3 Da PI: 6.3451

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00174.1.g00390.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30.6	5.9e-10	25	62	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Zmw_sc00174.1.g00390.1.sm.mk 25 FEHflHPYPKDSDKMMLAKQTGLTRSQVSNWFINARVR 62 664459******************************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	12.034	3	66	IPR001356	Homeobox domain
SMART	SM00389	2.7E-9	6	70	IPR001356	Homeobox domain
CDD	cd00086	9.74E-14	6	67	No hit	No description
SuperFamily	SSF46689	1.45E-17	7	73	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.6E-29	9	72	IPR009057	Homeodomain-like
Pfam	PF05920	1.3E-18	23	62	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MQGGAWRPQR GLPERSVSIL RAWLFEHFLH PYPKDSDKMM LAKQTGLTRS QVSNWFINAR 60 VRLWKPMVEE MYLEETKDRD AAAGNEEGKS GGVGKSGTVE DDNGGGDGTP RPDRETAKGV 120 RVHGSSLLEL AGDHQATHAG LYGDDDEDED GADAMQRRIK KARGDEAAAA APGSTFHHHV 180 HEMAALHAQA AAAARQQHEQ VSHRELLMKF MESGAGARDQ HQQDGRYSLF AQAAQAPYGQ 240 FSSEPFAFAG NGGVSLTLGL PHGAGAGGGA ADQTASFLMG GSTAGNNSVS HGAAAGGYDM 300 NMQSTKSFAA QLMRDFVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5bng_A	3e-18	12	70	1	59	Homeobox protein Meis2
5bng_B	3e-18	12	70	1	59	Homeobox protein Meis2
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025827941.1	1e-130	BEL1-like homeodomain protein 1
Refseq	XP_025827942.1	1e-130	BEL1-like homeodomain protein 1
Refseq	XP_025827943.1	1e-130	BEL1-like homeodomain protein 1
Refseq	XP_025827944.1	1e-130	BEL1-like homeodomain protein 1
TrEMBL	A0A1E5WEK5	1e-130	A0A1E5WEK5_9POAL; BEL1-like homeodomain protein 1
STRING	Pavir.Ha01822.1.p	1e-128	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4816	37	58