PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00174.1.g00300.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 472aa MW: 51914.8 Da PI: 4.5107

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00174.1.g00300.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	202.2	3.1e-62	99	462	2	372
GRAS 2 velLlecAeavssgdlelaqalLarlsel.....aspdgdpmqRlaayfteALaarlarsvselykalppsetseknssee 77 +lLl+ Aeav+ +d +la+a+L++l +l +++ +++ la +f+++L++++++ y + p+e + +s + Zmw_sc00174.1.g00300.1.am.mk 99 SDLLLTGAEAVEIRDSSLASAVLSKLDHLlpdicENEANGSLHHLAYHFAQGLHHQMSG----AYTPCYPQELP---QSGV 172 689***********************988875566669**************9....66666677777...6778 PP GRAS 78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skee 157 ++a+ + +e sP++kf+h+t+NqaIl+a+ + vH++Df+i +G+QW++++ L+ +g s+ +T+v +sg s ++ Zmw_sc00174.1.g00300.1.am.mk 173 MSAHLMIQEFSPFVKFAHFTTNQAILDATMDDMDVHVVDFNIAEGVQWASFMSDLSR--HGDKSFHLTAVIIDDSGySDNT 251 8888889********************************************98..5778999999888899999 PP GRAS 158 leetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkv 238 +t rL++fAe+l +pf++n+l ++ dl ++++ + + ++++++ +l sl++ + ++ +vk+l+Pk+ Zmw_sc00174.1.g00300.1.am.mk 252 CYTTVLRLSEFAESLSLPFKYNFLRVHYAGDL--DDFSRNCEGSVIISCDT--TNLCYT--SLSKLQILLIGCVKKLQPKL 326 ********************955555555..88888889999999987..444433..344444699******* PP GRAS 239 vvvveqeadh.nse......sFlerflealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhe 310 vv++e+e+ + +++ sF+e f+e l+++++lf+sl++ l + + vEr ++g++i++ v + g+e Zmw_sc00174.1.g00300.1.am.mk 327 VVIAEEELVRmGKGaclshaSFVEFFFEGLHHFTVLFESLASCLNGGDdkVCLRLVERDVVGPKIQDFVGQHGSE------ 401 ***4442333455555****************999877664466789***************9...... PP GRAS 311 tlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372 tl+ + GF p +ls + +qa+ll+ ++ + + v +e+g l l+Wk+rpLvsvS+ Zmw_sc00174.1.g00300.1.am.mk 402 TLKAAAGANVLEGFMPCELSACNIAQARLLVGLFS-RSFGVANEKGRLQLCWKSRPLVSVSV 462 444445555667*******************.66*********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	30.311	72	445	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-59	99	462	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MSYPCSPLLS SLPQEVGTDS LWSPHVALHD NATAADLSPI QLDDREFVDD TVGIDSSVFH 60 EQYCFDADAF ANCDVRFLSE EGNNLAAIQE ELMEDSSLSD LLLTGAEAVE IRDSSLASAV 120 LSKLDHLLPD ICENEANGSL HHLAYHFAQG LHHQMSGAYT PCYPQELPQS GVMSAHLMIQ 180 EFSPFVKFAH FTTNQAILDA TMDDMDVHVV DFNIAEGVQW ASFMSDLSRH GDKSFHLTAV 240 IIDDSGYSDN TCYTTVLRLS EFAESLSLPF KYNFLRVHYA GDLDDFSRNC EGSVIISCDT 300 TNLCYTSLSK LQILLIGCVK KLQPKLVVIA EEELVRMGKG ACLSHASFVE FFFEGLHHFT 360 VLFESLASCL NGGDDKVCLR LVERDVVGPK IQDFVGQHGS ETLKAAAGAN VLEGFMPCEL 420 SACNIAQARL LVGLFSRSFG VANEKGRLQL CWKSRPLVSV SVYTPVPKEK IL

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MSYPCSPLLS SLPQEVGTDS LWSPHVALHD NATAADLSPI QLDDREFVDD TVGIDSSVFH  60
EQYCFDADAF ANCDVRFLSE EGNNLAAIQE ELMEDSSLSD LLLTGAEAVE IRDSSLASAV  120
LSKLDHLLPD ICENEANGSL HHLAYHFAQG LHHQMSGAYT PCYPQELPQS GVMSAHLMIQ  180
EFSPFVKFAH FTTNQAILDA TMDDMDVHVV DFNIAEGVQW ASFMSDLSRH GDKSFHLTAV  240
IIDDSGYSDN TCYTTVLRLS EFAESLSLPF KYNFLRVHYA GDLDDFSRNC EGSVIISCDT  300
TNLCYTSLSK LQILLIGCVK KLQPKLVVIA EEELVRMGKG ACLSHASFVE FFFEGLHHFT  360
VLFESLASCL NGGDDKVCLR LVERDVVGPK IQDFVGQHGS ETLKAAAGAN VLEGFMPCEL  420
SACNIAQARL LVGLFSRSFG VANEKGRLQL CWKSRPLVSV SVYTPVPKEK IL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-28	139	465	55	380	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021317590.1	0.0	uncharacterized protein LOC8070665
Refseq	XP_025826871.1	0.0	nodulation-signaling pathway 2 protein-like
TrEMBL	A0A2S3ICH5	0.0	A0A2S3ICH5_9POAL; Uncharacterized protein
TrEMBL	A0A2T7CK87	0.0	A0A2T7CK87_9POAL; Uncharacterized protein
STRING	Sb05g003820.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7684	32	50