PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00172.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 616aa MW: 66730 Da PI: 10.4857

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00172.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.5	5.6e-19	408	462	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +f++eq++ Le++F+ + ++ +++ +LA++lgL+ rqV +WFqN+Ra++k Zmw_sc00172.1.g00060.1.am.mk 408 RNKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWK 462 67789*************************************************9 PP
2	HD-ZIP_I/II	120.2	1e-38	409	500	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 +k+r+s+eq+k+LE++F +++kLep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y+aL++ ydal + e+L+k Zmw_sc00172.1.g00060.1.am.mk 409 NKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYESLKK 489 79***************************************************************************** PP HD-ZIP_I/II 83 eveeLreelke 93 e+++L ++l+e Zmw_sc00172.1.g00060.1.am.mk 490 EKHALLKQLAE 500 ****99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-19	399	464	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.44E-18	403	466	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.589	404	464	IPR001356	Homeobox domain
SMART	SM00389	1.8E-16	407	468	IPR001356	Homeobox domain
CDD	cd00086	3.27E-17	408	465	No hit	No description
Pfam	PF00046	2.2E-16	408	462	IPR001356	Homeobox domain
PRINTS	PR00031	3.8E-5	435	444	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	439	462	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.8E-5	444	460	IPR000047	Helix-turn-helix motif
Pfam	PF02183	6.7E-11	464	500	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 616 aa Download sequence Send to blast
MMAESNFAGL RPFFEWWRFK MTRACSSHVC ALSGHLPSLI PPVLTSRTRS FFPTLREHPH 60 CLTGMLSSPM GRGGALCHAA RLGPDGGGDV LFVLTVTRFL GNPHVGKACI QPKYPVPDKV 120 VLQLKKSTTM SLPVAAGTTP ASPSPVAQLE SQAPHVAAAC LGALPPRPHP LIVLILKKMS 180 KRCYGHIAHV VPGPNALNRA AALTVAAGSH TARSRRAATP ATSCRRATRG RPVVRTNRPN 240 KGARAPLRGA VTSTASADGR QYLPLGSETS AGTAIYTGRR PAYERSPSPA RPPLPGPAPG 300 RILQRDPATA TRGTARRASY RDPRPGGKKR EERDRAGSAA PRSRPSCDPA PSVPPPTVLH 360 QLVHCRGRER ERERALAMEG DEDVPEWMMD AGGASGGKRK GGGGAVDRNK KRFSEEQIKS 420 LESMFATQTK LEPRQKLQLA RELGLQPRQV AIWFQNKRAR WKSKQLEREY SALRDDYDAL 480 LCSYESLKKE KHALLKQLAE MLQEPGPKYG SNAVDALTGD DDSLKVVTGM KEEFSDVRPA 540 APYSSVEEAG GAGKFTPFAD DAAGNLFRPP PQPPAGFTAS GPLEHQPFQF QSSFWPSSAE 600 QTCGSSQWWE LESLSE

Sequence ? help Back to Top

Protein Sequence Length: 616 aa Download sequence Send to blast

MMAESNFAGL RPFFEWWRFK MTRACSSHVC ALSGHLPSLI PPVLTSRTRS FFPTLREHPH  60
CLTGMLSSPM GRGGALCHAA RLGPDGGGDV LFVLTVTRFL GNPHVGKACI QPKYPVPDKV  120
VLQLKKSTTM SLPVAAGTTP ASPSPVAQLE SQAPHVAAAC LGALPPRPHP LIVLILKKMS  180
KRCYGHIAHV VPGPNALNRA AALTVAAGSH TARSRRAATP ATSCRRATRG RPVVRTNRPN  240
KGARAPLRGA VTSTASADGR QYLPLGSETS AGTAIYTGRR PAYERSPSPA RPPLPGPAPG  300
RILQRDPATA TRGTARRASY RDPRPGGKKR EERDRAGSAA PRSRPSCDPA PSVPPPTVLH  360
QLVHCRGRER ERERALAMEG DEDVPEWMMD AGGASGGKRK GGGGAVDRNK KRFSEEQIKS  420
LESMFATQTK LEPRQKLQLA RELGLQPRQV AIWFQNKRAR WKSKQLEREY SALRDDYDAL  480
LCSYESLKKE KHALLKQLAE MLQEPGPKYG SNAVDALTGD DDSLKVVTGM KEEFSDVRPA  540
APYSSVEEAG GAGKFTPFAD DAAGNLFRPP PQPPAGFTAS GPLEHQPFQF QSSFWPSSAE  600
QTCGSSQWWE LESLSE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	395	403	GGKRKGGGG

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7873	34	48