PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00167.1.g00500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRAS | ||||||||
Protein Properties | Length: 464aa MW: 49925.8 Da PI: 6.4046 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 285.7 | 1.3e-87 | 99 | 459 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 +el+l+cA+ ++ gd a+++++ l la p+ d+ Rla +f++ALa+r+ +++ e++++ p + s +a+ Zmw_sc00167.1.g00500.1.am.mk 99 RELVLACADRLHRGDVDGARRVVEALLSLADPRSdDAADRLAYHFARALARRVDGKGREVAESPVPPAPS-------PSAY 172 5789*************************9998879*******************999999887665555.......4788 PP GRAS 82 klfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskee 157 +++++ P+l+f+hltaNqaIlea+++ +rvHi+D+d+ +G+QWp+Llqa+a+R+ gpp++RiTg g +++ Zmw_sc00167.1.g00500.1.am.mk 173 LAYNQMAPFLRFAHLTANQAILEAAATGvvRRVHIVDLDAAHGVQWPPLLQAIAERAdpdLGPPEVRITGAGT----DRDV 249 99**********************999989***************************66666***********....**** PP GRAS 158 leetgerLakfAeelgvpfefnvl...vakrledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvks 233 +++tg+rL+ fA++l++pf+f++l ++l++ L+++p+E+l+Vn+vl lh+l + s Zmw_sc00167.1.g00500.1.am.mk 250 IHRTGDRLRAFASSLNLPFRFHPLllpCPTQLAAYraISTGLELHPDETLVVNCVLFLHQLG---G-----------EGES 316 ************************6552223333311245679999***************8...3...........3357 PP GRAS 234 lsPkvvvvveqeadhnse...sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhet 311 ++P+vv+++e+ea+ ++ ++ +r++ a++yysa+fd+lea +p+ s +r +vE+e+lg+ei ++ a ++ Zmw_sc00167.1.g00500.1.am.mk 317 MNPTVVTIAEREASIGGYcpnDLPRRVAAAMDYYSAVFDALEAMVPPGSADRLSVEHEILGQEIDAAIDPCLAG--GMSRR 395 ************9997654559**********************************************987776..56789 PP GRAS 312 lekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +e W ++ ++aG++p pls++a++qa+ llr ++ s+gy vee +g+ +lgW++rpL+svS+W+ Zmw_sc00167.1.g00500.1.am.mk 396 FEWWASAARAAGLSPRPLSTFAVSQARFLLRLHYpSEGYVVEEARGACFLGWQTRPLMSVSSWQ 459 9**************************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 47.361 | 72 | 438 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.4E-85 | 99 | 459 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
MNARHLRTVE DGGDPMHNGT GRMIANSALS GLCRPELRFA CARAPGCYTG LIILCHALLR 60 TLPPDAAMLG APGGGRDDHG EAQPHENRVG PAAAPSSPRE LVLACADRLH RGDVDGARRV 120 VEALLSLADP RSDDAADRLA YHFARALARR VDGKGREVAE SPVPPAPSPS AYLAYNQMAP 180 FLRFAHLTAN QAILEAAATG VVRRVHIVDL DAAHGVQWPP LLQAIAERAD PDLGPPEVRI 240 TGAGTDRDVI HRTGDRLRAF ASSLNLPFRF HPLLLPCPTQ LAAYRAISTG LELHPDETLV 300 VNCVLFLHQL GGEGESMNPT VVTIAEREAS IGGYCPNDLP RRVAAAMDYY SAVFDALEAM 360 VPPGSADRLS VEHEILGQEI DAAIDPCLAG GMSRRFEWWA SAARAAGLSP RPLSTFAVSQ 420 ARFLLRLHYP SEGYVVEEAR GACFLGWQTR PLMSVSSWQS AVEQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-46 | 134 | 459 | 38 | 375 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806722.1 | 0.0 | protein MONOCULM 1 | ||||
Swissprot | Q84MM9 | 1e-132 | MOC_ORYSJ; Protein MONOCULM 1 | ||||
TrEMBL | W8VJT6 | 0.0 | W8VJT6_9POAL; Lateral suppressor | ||||
STRING | Pavir.J22770.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3653 | 34 | 79 |