PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00165.1.g00140.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 405aa    MW: 45599.9 Da    PI: 8.7468
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00165.1.g00140.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.42.8e-095779326
                                    S---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                                    +  C f+++ G C+yG+rC++ H+
  Zmw_sc00165.1.g00140.1.sm.mkhc 57 RTVCTFYQK-GACSYGSRCRYDHV 79
                                    678******.*************7 PP
2zf-CCCH22.91.5e-07176197426
                                     ---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                     ++C+ fa+ G C+yG++C  +Hg
  Zmw_sc00165.1.g00140.1.sm.mkhc 176 PICS-FAAAGNCPYGENCLQMHG 197
                                     6788.*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.5075481IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-65580IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-55578IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-75779IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-45878IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.267172199IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014173198IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-4176197IPR000571Zinc finger, CCCH-type
SuperFamilySSF578504.12E-13230305No hitNo description
Gene3DG3DSA:3.30.40.102.9E-10234300IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001626.10E-5240300No hitNo description
PROSITE profilePS5008912.46241299IPR001841Zinc finger, RING-type
PfamPF000973.6E-8241298IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001842.1E-7241298IPR001841Zinc finger, RING-type
PROSITE patternPS005180265274IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.676328357IPR000571Zinc finger, CCCH-type
SMARTSM003560.011328356IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
RGAVAEVEEA RHRLRASPIP RRRGGEGLNP RVGISAVLLG PRESRPAPKY PLVRRRRTVC  60
TFYQKGACSY GSRCRYDHVK VSRNPRVLPP QPSSSTTRPV ASTLQVLSSS HPLHMGHQKN  120
SSNETQQTSM NMLEHSGIKS PWRSDFQLAT VSEDDIDWSA NSTSQNQAPM RPADLPICSF  180
AAAGNCPYGE NCLQMHGDLC TTCGKMCLHP YRPDERAEHI KLCEKNHKRL EALKRSQEIE  240
CSVCLDRVLS KPTAAERKFG LLSECDHAFC IACIRNWRNN SPASGMDVNS ALRACPICRK  300
LSYYVIPSVL WYFSKEEKQE IIESYKSKLK SIDCKYFDFG TGSCPFGTSC FYRHAYRDGR  360
LEEVVLRHLD ADDGSTVIAK NIRNFGVHWS PARHLDDPIQ EVSVI
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965338.10.0E3 ubiquitin-protein ligase makorin
SwissprotQ5ZA070.0C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLK3XXQ20.0K3XXQ2_SETIT; Uncharacterized protein
STRINGSi006712m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53263356
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]