PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00159.1.g00420.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 564aa MW: 60948 Da PI: 9.3481

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00159.1.g00420.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.1	1.5e-31	262	317	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++ LGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Zmw_sc00159.1.g00420.1.am.mk 262 KARRCWSPELHRRFVNALQILGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 317 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.69	259	319	IPR017930	Myb domain
SuperFamily	SSF46689	5.32E-17	259	320	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.2E-28	260	320	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.4E-26	262	317	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-6	264	315	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009266	Biological Process	response to temperature stimulus
GO:0009740	Biological Process	gibberellic acid mediated signaling pathway
GO:0010452	Biological Process	histone H3-K36 methylation
GO:0048579	Biological Process	negative regulation of long-day photoperiodism, flowering
GO:1903507	Biological Process	negative regulation of nucleic acid-templated transcription
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 564 aa Download sequence Send to blast
MSSSSPSDLT LDYKPNGGAY AAIPKQQQAP PLVDGHHLTT EPASQKLREF LARLEEERLK 60 IDAFKRELPL CMQLLNHAME AYKQQLEAYQ MGSQQAVATR PLVLEEFIPL KNIGIDAVTD 120 KPGNPPSEKA TWMESAQLWN GPAADTAAKG PQTPKERSEH PLPIDTLGTL DGRRSGGAFL 180 PFAKDKSAVP DAATALPELA LAPAEKDAVA EVDRKSPYLD AAGGGNNGVL GALRDTQNGG 240 VKPTSAAPEG QASPAPPQTH RKARRCWSPE LHRRFVNALQ ILGGAQVATP KQIRELMKVD 300 GLTNDEVKSH LQKYRLHTRR PPAPPNPATA APQLVVLGGI WVPPEYAAQG TAPAIYGAHP 360 ATQPHYTAAV AAQEYYPSPA AWQGQMHLLL CVHVSSRAVV AGATCHGLPR NDSCRVVSAI 420 AVYIKAHTEV MPYVSMVMLG SRARRPCSRA SRRAPGTAHR RRPVREEGWY MDARGKTHAL 480 REWAVTLEED IGLAQGGRRV RAAAAELQDH QQDGQDAAQE AAAPRVQGVR AAAVHDMSSA 540 NFEVEGAVRR DEGAVRRERG RRPA

Sequence ? help Back to Top

Protein Sequence Length: 564 aa Download sequence Send to blast

MSSSSPSDLT LDYKPNGGAY AAIPKQQQAP PLVDGHHLTT EPASQKLREF LARLEEERLK  60
IDAFKRELPL CMQLLNHAME AYKQQLEAYQ MGSQQAVATR PLVLEEFIPL KNIGIDAVTD  120
KPGNPPSEKA TWMESAQLWN GPAADTAAKG PQTPKERSEH PLPIDTLGTL DGRRSGGAFL  180
PFAKDKSAVP DAATALPELA LAPAEKDAVA EVDRKSPYLD AAGGGNNGVL GALRDTQNGG  240
VKPTSAAPEG QASPAPPQTH RKARRCWSPE LHRRFVNALQ ILGGAQVATP KQIRELMKVD  300
GLTNDEVKSH LQKYRLHTRR PPAPPNPATA APQLVVLGGI WVPPEYAAQG TAPAIYGAHP  360
ATQPHYTAAV AAQEYYPSPA AWQGQMHLLL CVHVSSRAVV AGATCHGLPR NDSCRVVSAI  420
AVYIKAHTEV MPYVSMVMLG SRARRPCSRA SRRAPGTAHR RRPVREEGWY MDARGKTHAL  480
REWAVTLEED IGLAQGGRRV RAAAAELQDH QQDGQDAAQE AAAPRVQGVR AAAVHDMSSA  540
NFEVEGAVRR DEGAVRRERG RRPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-14	262	315	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-14	262	315	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-14	262	315	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-14	262	315	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-14	262	315	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-14	262	315	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-14	262	315	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-14	262	315	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-14	262	315	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-14	262	315	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-14	262	315	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-14	262	315	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	548	562	RRDEGAVRRERGRRP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may play a role in regulatory networks controlling development and metabolism. {ECO:0000250\|UniProtKB:Q6Z869}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00261	DAP	Transfer from AT2G03500	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002457252.1	0.0	transcription factor NIGTH1
Swissprot	Q5VRW2	1e-140	NOH1_ORYSJ; Transcription factor NIGTH1
TrEMBL	A0A3L6SLE0	0.0	A0A3L6SLE0_PANMI; Putative transcription factor GLK2
STRING	Sb03g004090.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9773	33	38

Publications ? help Back to Top
Kamrul Huda KM, et al. Salinity and drought tolerant OsACA6 enhances cold tolerance in transgenic tobacco by interacting with stress-inducible proteins. Plant Physiol. Biochem., 2014. 82: p. 229-38 [PMID:24992889]