PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00158.1.g00450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 217aa MW: 23346.3 Da PI: 7.5619 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.8 | 4.6e-09 | 41 | 90 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +e+ErrRR++++ +L +llPk + ls + +A YIk L Zmw_sc00158.1.g00450.1.am.mk 41 RKEIERRRRQEMRRLCVKLASLLPKEHYSSRDTLSQLGSVDEAAAYIKRL 90 589**********************54455555***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.614 | 36 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.01E-9 | 41 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-9 | 41 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-6 | 42 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.4E-5 | 42 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MGSAGGLLIQ IEIGIGTQSG ERSRRSMTSS GSGTAPAAME RKEIERRRRQ EMRRLCVKLA 60 SLLPKEHYSS RDTLSQLGSV DEAAAYIKRL KDRVDALHQK RSAAMGGGGA GASTSMAVTT 120 SSDTGSQERA ADEAAAAPVV EVRQHNDGSS LDVVLISSAE RPFKLHEVAT VLEEEGAEIV 180 NANFSVTGQR IFHTIYCRRA CDGLTELSNL LQMKILE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002457514.2 | 4e-68 | transcription factor bHLH162 | ||||
TrEMBL | A0A1B6Q2F7 | 8e-67 | A0A1B6Q2F7_SORBI; Uncharacterized protein | ||||
STRING | Sb03g008570.1 | 2e-69 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP829 | 36 | 133 |