PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00158.1.g00420.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 207aa MW: 22029.1 Da PI: 9.8299

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00158.1.g00420.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.5	2.4e-08	25	90	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCC.C................TTS-.STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.as.............kapskK.lsKaeiLekAveYIksL 54 + +E++RR +++ +L +l+P+ a ++p+k ++ + L A YIk+L Zmw_sc00158.1.g00420.1.am.mk 25 ERKDVEKNRRLHMKGLCLKLSSLVPPsAAakhaalrsapassSNPNKDtVTQLDHLDNAAAYIKHL 90 56889*******************555*********7777777**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.578	21	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.53E-9	23	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-10	23	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-5	25	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MKSGRQSGSA AAGEGTAHSG RNKMERKDVE KNRRLHMKGL CLKLSSLVPP SAAAKHAALR 60 SAPASSSNPN KDTVTQLDHL DNAAAYIKHL TARIEELRQR KGSSSRHALS APAAAAGDVR 120 MPVIEVRCQD GALEAVLVSA AERPFRMHEV VAVLEQEGAE VVSASFSVVG DKVFYTVHSQ 180 ALISAGVEGL DASRVADRLR GLLLVEY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004967963.1	3e-81	transcription factor bHLH168
TrEMBL	K3XLS4	6e-80	K3XLS4_SETIT; Uncharacterized protein
STRING	Si002847m	1e-80	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP829	36	133