PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00154.1.g00490.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 529aa MW: 58340.1 Da PI: 10.7212

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00154.1.g00490.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.7	4.5e-19	318	372	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +f++eq++ Le++F+ + ++ +++ +LA++lgL+ rqV +WFqN+Ra++k Zmw_sc00154.1.g00490.1.am.mk 318 RNKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWK 372 67789*************************************************9 PP
2	HD-ZIP_I/II	120	1.2e-38	319	410	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 +k+r+s+eq+k+LE++F +++kLep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y+aL++ ydal + e+L+k Zmw_sc00154.1.g00490.1.am.mk 319 NKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYESLKK 399 79***************************************************************************** PP HD-ZIP_I/II 83 eveeLreelke 93 e+++L ++l++ Zmw_sc00154.1.g00490.1.am.mk 400 EKHALLKQLEK 410 ****99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-19	308	374	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.88E-18	312	376	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.589	314	374	IPR001356	Homeobox domain
SMART	SM00389	1.8E-16	317	378	IPR001356	Homeobox domain
Pfam	PF00046	1.8E-16	318	372	IPR001356	Homeobox domain
CDD	cd00086	1.01E-16	318	375	No hit	No description
PRINTS	PR00031	2.9E-5	345	354	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	349	372	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.9E-5	354	370	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.0E-12	374	416	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence Send to blast
MGRGGALCHA ARLGPDGGGD VLSVLTVTRF LGNPHVGKEC IQPKYPVPDK VVLQLKKSTT 60 MSLPVAAGTT PASPSPVVQL ESQARLVAAA CLGALAPRPH PLIVLMSGVN RRRRQSHGTI 120 TTRSHPSHKL PPRHPRPPRR PHQPPEQRRA RAAARRRNKH GLGGRTAPRA SASPRPSAGS 180 NSPARPRDSD AGHSAARQLQ GPPVRGEEER REGQGRVRTP RRLISHTVAI TPIKQLDRPA 240 RQHLARVPIA IRHLPFLLLL FFTSSFTAEG ERERERERER ERERALAMEG DEDVPEWMMD 300 ASGASGGKRK GGGGAVDRNK KRFSEEQIKS LESMFATQTK LEPRQKLQLA RELGLQPRQV 360 AIWFQNKRAR WKSKQLEREY SALRDDYDAL LCSYESLKKE KHALLKQLEK LAEMLQEPGP 420 KYGSNAVDAL TGDDDSLKVV TGMKEEFSDV RPAAPYSSVE EAGGAGKFTP FADDAAGNLF 480 RPPPQPPVGF TASGPPEHQP FQFQSSFWPS SAEQTCGSSQ WWELESLSE

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence Send to blast

MGRGGALCHA ARLGPDGGGD VLSVLTVTRF LGNPHVGKEC IQPKYPVPDK VVLQLKKSTT  60
MSLPVAAGTT PASPSPVVQL ESQARLVAAA CLGALAPRPH PLIVLMSGVN RRRRQSHGTI  120
TTRSHPSHKL PPRHPRPPRR PHQPPEQRRA RAAARRRNKH GLGGRTAPRA SASPRPSAGS  180
NSPARPRDSD AGHSAARQLQ GPPVRGEEER REGQGRVRTP RRLISHTVAI TPIKQLDRPA  240
RQHLARVPIA IRHLPFLLLL FFTSSFTAEG ERERERERER ERERALAMEG DEDVPEWMMD  300
ASGASGGKRK GGGGAVDRNK KRFSEEQIKS LESMFATQTK LEPRQKLQLA RELGLQPRQV  360
AIWFQNKRAR WKSKQLEREY SALRDDYDAL LCSYESLKKE KHALLKQLEK LAEMLQEPGP  420
KYGSNAVDAL TGDDDSLKVV TGMKEEFSDV RPAAPYSSVE EAGGAGKFTP FADDAAGNLF  480
RPPPQPPVGF TASGPPEHQP FQFQSSFWPS SAEQTCGSSQ WWELESLSE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	273	283	RERERERERER
2	305	313	GGKRKGGGG

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00320	DAP	Transfer from AT2G46680	Download

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7873	34	48