PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00153.1.g00090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 410aa MW: 45408.5 Da PI: 6.0776 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.9 | 7.5e-16 | 119 | 166 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++ + ++G g+W+++++ g+ R++k+c++rw +yl Zmw_sc00153.1.g00090.1.am.mk 119 RGLWSPEEDEKLYNHIIRYGVGCWSSVPKLAGLERCGKSCRLRWINYL 166 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.4 | 4.6e-15 | 172 | 215 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++l++ +k lG++ W+ Ia+ ++ gRt++++k++w++ Zmw_sc00153.1.g00090.1.am.mk 172 RGSFSQQEEDLIISFHKILGNR-WSQIASQLP-GRTDNEIKNFWNS 215 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.594 | 114 | 170 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-23 | 114 | 169 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.1E-28 | 116 | 213 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8E-13 | 118 | 168 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-14 | 119 | 166 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.33E-11 | 122 | 166 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-25 | 170 | 222 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-14 | 171 | 219 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.651 | 171 | 221 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.2E-13 | 172 | 215 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.78E-10 | 174 | 214 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MVGEDWDVSG HYCTQQCREG ETGHHGGDGW NCKCMDRAIS LNEPECIVRA TVPAARRIGR 60 ASLFNTIDGA GKETTTRLKR TTVVGQHQRS QLACVARLPC LPEESMGREA EAGRPKLRRG 120 LWSPEEDEKL YNHIIRYGVG CWSSVPKLAG LERCGKSCRL RWINYLRPDL KRGSFSQQEE 180 DLIISFHKIL GNRWSQIASQ LPGRTDNEIK NFWNSCIKKK LQQQGIDPST HKPINEDAAE 240 PSDDCNQLPT DEHCLPIAAA ASDPLAPHSP AVSFDPLSVT NAPAMQPPYG AAHSFRSDNL 300 CDYNLSDAAT YSAYNGGGDS SSNSNSAWTC GNVIGGEPMP HMDIFGRDVE PYSFDPAKFS 360 PWNHQQQQHH HHDADAAAGF PIRSMSRDLP ESCFDLARGA LEDEFSVDFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-30 | 113 | 221 | 1 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004968898.1 | 1e-171 | myb-related protein Hv33 | ||||
Refseq | XP_004968899.1 | 1e-171 | myb-related protein Hv33 | ||||
TrEMBL | K3XJZ7 | 1e-170 | K3XJZ7_SETIT; Uncharacterized protein | ||||
STRING | Si002220m | 1e-171 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11164 | 30 | 41 |