PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00148.1.g00250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 425aa MW: 45931.6 Da PI: 6.8455 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.1 | 3.6e-17 | 128 | 175 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+ ++++G g+W+++++ g+ R++k+c++rw +yl Zmw_sc00148.1.g00250.1.am.mk 128 RGLWSPEEDEKLISHIAKYGHGCWSSVPKLAGLERCGKSCRLRWINYL 175 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.7 | 1.1e-17 | 181 | 225 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +++eE++l+++++ +lG++ W+ Ia++++ gRt++++k++w++y Zmw_sc00148.1.g00250.1.am.mk 181 RGTFSQEEEDLIIQLHSMLGNK-WSQIAAHLP-GRTDNEVKNFWNSY 225 899*******************.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.7E-27 | 120 | 178 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.36 | 123 | 175 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.48E-30 | 126 | 222 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-14 | 127 | 177 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.4E-16 | 128 | 175 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.40E-12 | 131 | 175 | No hit | No description |
PROSITE profile | PS51294 | 27.254 | 176 | 230 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-26 | 179 | 230 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-17 | 180 | 228 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-16 | 181 | 225 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.88E-12 | 183 | 226 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MAPVPVFLSG PGPFLSFPLG HVINQAKEKR QETSSAAKRG ARTRAVACAT GKGKAGNENT 60 YLRSTSLLAS SSLHWHQSLL CSSSPSPSFP ACHHQNLGSS SRSAWTADTS DVDDGDTHSC 120 CHKKKLRRGL WSPEEDEKLI SHIAKYGHGC WSSVPKLAGL ERCGKSCRLR WINYLRPDLK 180 RGTFSQEEED LIIQLHSMLG NKWSQIAAHL PGRTDNEVKN FWNSYIKKRL RERGIDPATH 240 KPIADVSASD AATTGACHAV FCDAELIPTT AALLQAPLAE PMLDDVVKPP SDWTTAGSAA 300 PSSLSSYLQA GCSFDMDVLA LQQEQQRCHA IVAPAMPSAS CSSMLTMADS ENCNGIIAGA 360 GANLPWLELG PNTWHLDELR WSEYFDGAFQ AAPSQQGALQ GQCVYASGND DVAAIHVDVH 420 GLSNW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-29 | 125 | 230 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796264.1 | 1e-128 | transcription factor MYB10-like | ||||
TrEMBL | A0A0A9ASW4 | 1e-149 | A0A0A9ASW4_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.J03230.1.p | 1e-129 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3092 | 33 | 85 |