PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00148.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 314aa MW: 33189.3 Da PI: 9.7839

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00148.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00038	209	229	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cg+ F ++ L H++ H Zmw_sc00148.1.g00030.1.am.mk 209 CTYCGRKFYSSQALGGHQNAH 229 *****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.78E-7	197	251	No hit	No description
PROSITE profile	PS50157	11.78	207	234	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	209	229	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MLGAAAAATK AAHHESGAFD RAKAGYMQDR AAIVVVQMQA LRQRIWIATC ARASSAAGAG 60 THKIASLRSI DILKNLQNRW VDERGPYRAQ PSGRPEESAK GHPAQVVMRT IWARPRRTAT 120 ARSPAGQHVD DDDDGAASAR YATAGPTNGG RPLTSPNGAA AGDDPTRQFQ SASEIIIIVV 180 AALMEVDLEL SLLHPAAAPE QEPTGFFLCT YCGRKFYSSQ ALGGHQNAHK YERTLAKRRM 240 EIALAMRAHG AAPGASSRSR ADAGVAGGAE EQPGRARMGA KQADAAISGL LLGKSSSSEY 300 GVERADELDL SLRL

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP183	36	274