PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00146.1.g00090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRAS | ||||||||
Protein Properties | Length: 176aa MW: 19322 Da PI: 10.6289 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 23.7 | 5.5e-08 | 12 | 49 | 81 | 118 |
GRAS 81 lklfsevsPilkfshltaNqaIleavegeervHiiDfd 118 +l+++ sP+++++ +aN aI+eav ++++H +Df Zmw_sc00146.1.g00090.1.am.mk 12 SQLLHDRSPCFRLALHAANVAIVEAVGDHRAIHLVDFX 49 57899*******************************96 PP | |||||||
2 | GRAS | 41.5 | 2e-13 | 53 | 124 | 104 | 172 |
GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeel 172 eav ++++H +Dfd+s + Q +aL q La+R+ + sl++T++ +p+s ++ +l +++erL+k+A+++ Zmw_sc00146.1.g00090.1.am.mk 53 EAVGDHRAIHLVDFDVSAP-QHAALVQYLADRRVSGTSLKVTAITDPSSPfaqsQTATLPAVEERLKKLADRV 124 899999**********987.99************************998889999999************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 13.116 | 1 | 176 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.9E-5 | 12 | 49 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.1E-11 | 53 | 124 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
LLRRGRVLGS QSQLLHDRSP CFRLALHAAN VAIVEAVGDH RAIHLVDFXX XXEAVGDHRA 60 IHLVDFDVSA PQHAALVQYL ADRRVSGTSL KVTAITDPSS PFAQSQTATL PAVEERLKKL 120 ADRVRNAGLD DGGSQGRGRR ELLQHPCSAQ SQKGTRRQRQ VVAVPFFFFL IVGKTD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008668998.1 | 2e-41 | scarecrow-like protein 8 | ||||
TrEMBL | A0A060CY61 | 5e-40 | A0A060CY61_MAIZE; GRAS transcription factor (Fragment) | ||||
STRING | GRMZM2G109869_P01 | 8e-41 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP24922 | 3 | 6 |