PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00142.1.g00110.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 444aa    MW: 48539.3 Da    PI: 6.9325
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00142.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.8e-17145192148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg W++eEde+l+  ++++G g+W+++++  g+ R++k+c++rw +yl
  Zmw_sc00142.1.g00110.1.am.mk 145 RGLWSPEEDEKLISHIAKYGHGCWSSVPKLAGLERCGKSCRLRWINYL 192
                                   788*******************************************97 PP
2Myb_DNA-binding55.61.2e-17198242147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg +++eE++l+++++ +lG++ W+ Ia++++ gRt++++k++w++y
  Zmw_sc00142.1.g00110.1.am.mk 198 RGTFSQEEEDLIIQLHSMLGNK-WSQIAAHLP-GRTDNEVKNFWNSY 242
                                   899*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.2E-27136195IPR009057Homeodomain-like
PROSITE profilePS5129419.36140192IPR017930Myb domain
SuperFamilySSF466893.74E-30143239IPR009057Homeodomain-like
SMARTSM007173.8E-14144194IPR001005SANT/Myb domain
PfamPF002498.9E-16145192IPR001005SANT/Myb domain
CDDcd001671.55E-12148192No hitNo description
PROSITE profilePS5129427.254193247IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-26196247IPR009057Homeodomain-like
SMARTSM007173.1E-17197245IPR001005SANT/Myb domain
PfamPF002491.2E-16198242IPR001005SANT/Myb domain
CDDcd001673.19E-12200243No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MAPVPVFLSG PGPFLSFPLG HVINQAKEKR QETSSGNVPL SRFAGTKLLL CVPVKEYKQL  60
HMQGGQREHL PEIDLPLGLF LLALASIAFM FLISLSFLPG LPPSEPGFLV SVGVDGRHER  120
RRRRGHTSEP GMAKQSCCHK KKLRRGLWSP EEDEKLISHI AKYGHGCWSS VPKLAGLERC  180
GKSCRLRWIN YLRPDLKRGT FSQEEEDLII QLHSMLGNKW SQIAAHLPGR TDNEVKNFWN  240
SYIKKRLRER GIDPATHKPI ADVSASDAAT TGACHAVFCD AELIPTTAAP LQAPLAEPML  300
DDVVKPPSDW TTAGSAAPSS LSSYLQAGCG FDMDALALQQ EQQRCHAILA PAMPSASCSS  360
MLTMADSENC NGANLPWLEL GPNTWHVDSY ATPQLDELRW SEYFDGAFQA AASQQGALQG  420
QCVYGGGNDD VAAIHVDVHG LSNW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-2914224724128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465218.11e-135transcription repressor MYB4
RefseqXP_025796264.11e-135transcription factor MYB10-like
TrEMBLA0A0A9ASW41e-158A0A0A9ASW4_ARUDO; Uncharacterized protein
STRINGPavir.J03230.1.p1e-137(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30923385