PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00137.1.g00240.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 239aa MW: 26530.1 Da PI: 7.8045

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00137.1.g00240.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.1	3.1e-18	95	149	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Le+ F+++++++ +++ LA++l+L rqV vWFqNrRa++k Zmw_sc00137.1.g00240.1.am.mk 95 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALANQLNLRPRQVEVWFQNRRARRK 149 78889************************************************98 PP
2	HD-ZIP_I/II	117.3	8.4e-38	95	183	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 +kk+rl+keq++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRAR k+kq E+d+e Lkr y++l+een+rL+ Zmw_sc00137.1.g00240.1.am.mk 95 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALANQLNLRPRQVEVWFQNRRARRKLKQAEVDCELLKRFYETLTEENRRLH 175 69***************************************************************************** PP HD-ZIP_I/II 82 keveeLree 90 e ++Lr + Zmw_sc00137.1.g00240.1.am.mk 176 CELQRLR-A 183 ****9.3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.11E-18	81	152	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.957	91	151	IPR001356	Homeobox domain
SMART	SM00389	2.0E-15	93	155	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.5E-17	93	154	IPR009057	Homeodomain-like
Pfam	PF00046	1.3E-15	95	149	IPR001356	Homeobox domain
CDD	cd00086	1.78E-16	95	152	No hit	No description
PROSITE pattern	PS00027	0	126	149	IPR017970	Homeobox, conserved site
SMART	SM00340	1.1E-15	151	194	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	1.7E-7	151	184	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MEHEEVGLAL GLSLGSGHHW FKEQPPPPPS QLCALEPSMS ISIRADDGSL PTQARPLNGA 60 VKREFPVEDD DGPMDRGLYS VVSSAADDDE GCNSRKKLRL TKEQSALLED RFKEHSTLNP 120 KQKVALANQL NLRPRQVEVW FQNRRARRKL KQAEVDCELL KRFYETLTEE NRRLHCELQR 180 LRALDHPHPA AFFMPGAALS ICPSCERLAS TPGAATATDR PKATGPAPLL SNFTKSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	99	SRKKLRL
2	143	151	RRARRKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004983488.1	1e-109	homeobox-leucine zipper protein HOX15
Swissprot	Q7G737	6e-72	HOX15_ORYSJ; Homeobox-leucine zipper protein HOX15
TrEMBL	K4AE82	1e-108	K4AE82_SETIT; Uncharacterized protein
STRING	Si037189m	1e-108	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2055	36	98

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]