PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00137.1.g00160.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 333aa MW: 36652.3 Da PI: 5.5835

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00137.1.g00160.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.8	1.1e-09	137	192	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCC.C.......TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.as....kapskKlsKaeiLekAveYIksL 54 h ++Er+RR+++ + f++L +++P ++ + +K++ L ++eY+++L Zmw_sc00137.1.g00160.1.am.mk 137 EHVIAERKRREKMHHQFATLASIVPDiTKwmmvSEFNLQTDKVSLLDSTIEYVHKL 192 6999********************666**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.51E-13	129	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.83	133	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-12	137	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.9E-7	137	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.47E-9	138	197	No hit	No description
SMART	SM00353	8.7E-10	139	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MDSANHQWLQ ELESDDVGEL ELINPLSMQK LAESLANELW GQPQEQQDNQ QEQCGYRSPS 60 LTGSHFVGHA NSTNRTTISS GVSNNMFPFT EASSSPVNLA AKEYTQQGVY STTTVKCCSS 120 SMTAKGGARR STSSVQEHVI AERKRREKMH HQFATLASIV PDITKWMMVS EFNLQTDKVS 180 LLDSTIEYVH KLRDRLKALQ DELQTTGSNT EESPAFDADC CVAGSKPNDG GDEAVSPKIE 240 VDVRGTTLLL RLVCREKKGV LLTVLMELEK HRISIVNTNV VPFAESSLNI TITAQVLHYL 300 LSNIPRPAAL SMLGGASNML NLAPEHSTIL YIT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	146	ERKRRE
2	142	147	RKRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022685471.1	1e-102	transcription factor bHLH19-like
TrEMBL	K4ACR6	1e-101	K4ACR6_SETIT; Uncharacterized protein
STRING	Si036673m	1e-102	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13896	17	25