PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00136.1.g00310.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 445aa    MW: 48225.6 Da    PI: 5.1036
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00136.1.g00310.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.65.1e-19227280356
                                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   k++++++eq+++Le+ Fe ++++  e++++LA+ lgL+ rqV vWFqNrRa++k
  Zmw_sc00136.1.g00310.1.am.mk 227 KKRRLSTEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWK 280
                                   45689************************************************9 PP
2HD-ZIP_I/II132.41.7e-42226318193
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   ekkrrls+eqv++LE+sFe+e+kLeperK++lar+LglqprqvavWFqnrRAR+ktkqlE+dy aL+++ydal++++++L+
  Zmw_sc00136.1.g00310.1.am.mk 226 EKKRRLSTEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYVALRQSYDALRADHDALR 306
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLreelke 93 
                                   +++++L +e+ke
  Zmw_sc00136.1.g00310.1.am.mk 307 RDKDALLAEIKE 318
                                   *******99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.84E-19222284IPR009057Homeodomain-like
PROSITE profilePS5007117.621222282IPR001356Homeobox domain
SMARTSM003892.0E-18225286IPR001356Homeobox domain
PfamPF000463.3E-16227280IPR001356Homeobox domain
CDDcd000863.15E-17227283No hitNo description
Gene3DG3DSA:1.10.10.601.2E-19229288IPR009057Homeodomain-like
PRINTSPR000312.1E-5253262IPR000047Helix-turn-helix motif
PROSITE patternPS000270257280IPR017970Homeobox, conserved site
PRINTSPR000312.1E-5262278IPR000047Helix-turn-helix motif
PfamPF021831.3E-16282323IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MSSRPGPLAH GVTGVTGEYV LPLARSANCN EASNWLTDAG TRIANPHKTS QEFTARHGSP  60
FTDPVHPARP CFSPVHRAPR RSHRTTTVEA DARARDLLNH GHVLPPGPES TRQLCAVLLG  120
GGVWIGAEEE DKHGDGPGWA QLQEGREGRR EPSPDAPFLV PLRPAAPPLI TLRAKKQFIM  180
KRPSGSRSGG GDGLVSMVQS DDRFVDVAVE EEADEDTEIP VGGGGEKKRR LSTEQVRALE  240
RSFETENKLE PERKARLARD LGLQPRQVAV WFQNRRARWK TKQLERDYVA LRQSYDALRA  300
DHDALRRDKD ALLAEIKELN AKLGDEDAAA SFSSVKEEPV ASDADPPPAA TAAQGSSESD  360
SSGVVNDTET ASEKKPAPTN AAEAEAVVPG ATALEGEVLF HAQLLKVEGD EAAFLDDDAA  420
ACGGFFADLQ PPSLPWWTEP MEHWA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251257ERKARLA
2274282RRARWKTKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3H1F81e-111A0A0D3H1F8_9ORYZ; Uncharacterized protein
STRINGOBART08G18330.11e-112(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30093482