PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00131.1.g00510.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YB

Protein Properties

Length: 204aa MW: 21733.5 Da PI: 8.1959

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00131.1.g00510.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	176.2	3.2e-55	30	122	1	93
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedy 79 vreqdrflPian+sri+kk++Pan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfe+y Zmw_sc00131.1.g00510.1.sm.mkhc 30 VREQDRFLPIANISRIVKKAVPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEEY 108 69*************************************************************************** PP NF-YB 80 veplkvylkkyrel 93 +eplkvyl+kyr+ Zmw_sc00131.1.g00510.1.sm.mkhc 109 IEPLKVYLQKYRQG 122 **********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.9E-52	28	131	IPR009072	Histone-fold
SuperFamily	SSF47113	5.12E-38	33	125	IPR009072	Histone-fold
Pfam	PF00808	5.1E-27	36	100	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.2E-22	64	82	No hit	No description
PROSITE pattern	PS00685	0	67	83	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.2E-22	83	101	No hit	No description
PRINTS	PR00615	1.2E-22	102	120	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MADWPTSPGG GGGSHESGSP RGGGGGGSGV REQDRFLPIA NISRIVKKAV PANGKIAKDA 60 KETVQECVSE FISFITSEAS DKCQREKRKT INGDDLLWAM ATLGFEEYIE PLKVYLQKYR 120 QGDSKLTAKA GDGSVKKDTL GHGGATSSTP QGMGQQGTYN QGMSYMQPQM FSICVTVVVK 180 TPDINWRPCV NQIPGDGPMT QGCP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_B	2e-47	29	121	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	2e-47	29	121	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961814.1	2e-90	nuclear transcription factor Y subunit B
Refseq	XP_004961815.1	2e-90	nuclear transcription factor Y subunit B
Refseq	XP_012700237.1	2e-90	nuclear transcription factor Y subunit B
Swissprot	P25209	6e-89	NFYB_MAIZE; Nuclear transcription factor Y subunit B
TrEMBL	A0A1D6FS52	7e-90	A0A1D6FS52_MAIZE; Nuclear transcription factor Y subunit B-8
STRING	Si023400m	7e-90	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331

Publications ? help Back to Top
Li XY, et al. Evolutionary variation of the CCAAT-binding transcription factor NF-Y. Nucleic Acids Res., 1992. 20(5): p. 1087-91 [PMID:1549471]