PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00124.1.g00300.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 461aa MW: 50260.5 Da PI: 6.6223

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00124.1.g00300.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.1	1.3e-17	166	219	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rqV +WFqNrRa++k Zmw_sc00124.1.g00300.1.am.mk 166 KKRRLNVEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWK 219 4568999**********************************************9 PP
2	HD-ZIP_I/II	123.7	8.7e-40	165	255	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 ekkrrl+ eqv++LE++Fe +kLeperK +lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aLkr++da+k++n++L Zmw_sc00124.1.g00300.1.am.mk 165 EKKRRLNVEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVKADNDALV 245 69***************************************************************************** PP HD-ZIP_I/II 82 keveeLreel 91 ++++L++e Zmw_sc00124.1.g00300.1.am.mk 246 LHNKKLQAEC 255 ****9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.81E-19	158	223	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.346	161	221	IPR001356	Homeobox domain
SMART	SM00389	1.3E-17	164	225	IPR001356	Homeobox domain
CDD	cd00086	3.63E-17	166	222	No hit	No description
Pfam	PF00046	5.2E-15	166	219	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.3E-18	168	229	IPR009057	Homeodomain-like
PRINTS	PR00031	2.8E-5	192	201	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	196	219	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.8E-5	201	217	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.2E-10	221	255	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence Send to blast
MGGAGGPPDR SGEGAEPCTL HVSLCVGLSL LAATPIRPMH PAPDGAVGYS FLMPMASNGM 60 ASSPPSFFPP NFLLQMQQTP LDHDPQEHHH SHLPPPPLHH PHHNPFLPSS QCPSLQDFQG 120 MAPMLGKRPM YDADVGTGDD LNGCGGGGDD ASKDELSDDG SQAGEKKRRL NVEQVRTLEK 180 NFELGNKLEP ERKLQLARAL GLQPRQVAIW FQNRRARWKT KQLEKDYDAL KRQLDAVKAD 240 NDALVLHNKK LQAECSQQKG CWKRRRWELA FHLRAYVVLT AFAESCCSKA RAASEWPANA 300 PPGLCSILPL SLDATLTQSI YSSWLLRIVL ALKGGREAGS ELINLNKETE ASCSNRSENS 360 SEINLDISRT PPSEGPVDPP AHQHQHAGNG AGGMILFYPS VGRSAGVDFD QLLHSSSGPK 420 MEQHGSGDGV QAPEQTSFGN LLCGVDEPPP FWPWADHQHF H

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence Send to blast

MGGAGGPPDR SGEGAEPCTL HVSLCVGLSL LAATPIRPMH PAPDGAVGYS FLMPMASNGM  60
ASSPPSFFPP NFLLQMQQTP LDHDPQEHHH SHLPPPPLHH PHHNPFLPSS QCPSLQDFQG  120
MAPMLGKRPM YDADVGTGDD LNGCGGGGDD ASKDELSDDG SQAGEKKRRL NVEQVRTLEK  180
NFELGNKLEP ERKLQLARAL GLQPRQVAIW FQNRRARWKT KQLEKDYDAL KRQLDAVKAD  240
NDALVLHNKK LQAECSQQKG CWKRRRWELA FHLRAYVVLT AFAESCCSKA RAASEWPANA  300
PPGLCSILPL SLDATLTQSI YSSWLLRIVL ALKGGREAGS ELINLNKETE ASCSNRSENS  360
SEINLDISRT PPSEGPVDPP AHQHQHAGNG AGGMILFYPS VGRSAGVDFD QLLHSSSGPK  420
MEQHGSGDGV QAPEQTSFGN LLCGVDEPPP FWPWADHQHF H

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	213	221	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002465782.1	1e-107	homeobox-leucine zipper protein HOX21
Swissprot	A2XD08	2e-78	HOX21_ORYSI; Homeobox-leucine zipper protein HOX21
TrEMBL	A3AEK5	1e-128	A3AEK5_ORYSJ; Uncharacterized protein
STRING	TRIUR3_12807-P1	1e-126	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2289	38	94