PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00123.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

CO-like

Protein Properties

Length: 596aa MW: 64102.2 Da PI: 9.8065

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00123.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22	3.4e-07	290	327	4	40
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Htvv 40 r C ++ ++ +C++++ +lC+ C H + H++v Zmw_sc00123.1.g00040.1.am.mk 290 RQCGACGGTPAAVHCRTDGAYLCAGCDAG-HARagHERV 327 68**************************9.977889875 PP
2	CCT	69.4	9.3e-24	523	566	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpRvKGrF+k++ Zmw_sc00123.1.g00040.1.am.mk 523 REARLMRYREKRKNRRFEKTIRYASRKAYAETRPRVKGRFAKRT 566 9****************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	2.9E-5	287	329	IPR000315	B-box-type zinc finger
CDD	cd00021	5.70E-6	290	329	No hit	No description
PROSITE profile	PS50119	8.674	292	329	IPR000315	B-box-type zinc finger
Pfam	PF06203	8.3E-18	523	565	IPR010402	CCT domain
PROSITE profile	PS51017	16.956	523	565	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 596 aa Download sequence Send to blast
MVSRPATRRR RKPSARTRSS LNRERYLFRS APPRWMGYTY PYPYPPPAGH PQSNLLHCML 60 ARSSVTAGLA EDALRGDVAG PGTRARFWQA KDTPEPEAAP RRTGSRARRR CPSARYDGIA 120 FVTRPALPDE LAVPSAAGHA TSRTAVAADM PSKLVVYFAW PGRDGYRLLQ RSPLASSSSP 180 RHPCPHHSLS VSPTSRIHHF FLAIDLFGNS FLGKFSTRGA RTGQRHDIIT HPYGDHQEAT 240 AARGLVQLRF ACWWTLPLGA SSLPLIGWRS KPRQVQVREE LGRYWGVGGR QCGACGGTPA 300 AVHCRTDGAY LCAGCDAGHA RAGHERVWVC EPIGSSTDAD ELLLGAAGDH DVVFGGGAWN 360 DAAEAGMVLR GAGDAKQDAK MDLFTFADVM DPFLGPEVAR FPLQADSVVP NDGSGGGAVE 420 LDFGGAVAAN ARPSYSSYMA ASVAHSGSSS EVGLVPDAIC GHGGSVTGGV IELDFAQSKA 480 AYIPYATTPT THSVPSLDTG AVPERSDGVA AGKVAAPATA ESREARLMRY REKRKNRRFE 540 KTIRYASRKA YAETRPRVKG RFAKRTTDGT EEIAPPRQPA YPYVLDFSGY GVVPSF

Sequence ? help Back to Top

Protein Sequence Length: 596 aa Download sequence Send to blast

MVSRPATRRR RKPSARTRSS LNRERYLFRS APPRWMGYTY PYPYPPPAGH PQSNLLHCML  60
ARSSVTAGLA EDALRGDVAG PGTRARFWQA KDTPEPEAAP RRTGSRARRR CPSARYDGIA  120
FVTRPALPDE LAVPSAAGHA TSRTAVAADM PSKLVVYFAW PGRDGYRLLQ RSPLASSSSP  180
RHPCPHHSLS VSPTSRIHHF FLAIDLFGNS FLGKFSTRGA RTGQRHDIIT HPYGDHQEAT  240
AARGLVQLRF ACWWTLPLGA SSLPLIGWRS KPRQVQVREE LGRYWGVGGR QCGACGGTPA  300
AVHCRTDGAY LCAGCDAGHA RAGHERVWVC EPIGSSTDAD ELLLGAAGDH DVVFGGGAWN  360
DAAEAGMVLR GAGDAKQDAK MDLFTFADVM DPFLGPEVAR FPLQADSVVP NDGSGGGAVE  420
LDFGGAVAAN ARPSYSSYMA ASVAHSGSSS EVGLVPDAIC GHGGSVTGGV IELDFAQSKA  480
AYIPYATTPT THSVPSLDTG AVPERSDGVA AGKVAAPATA ESREARLMRY REKRKNRRFE  540
KTIRYASRKA YAETRPRVKG RFAKRTTDGT EEIAPPRQPA YPYVLDFSGY GVVPSF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818683.1	1e-111	zinc finger protein CONSTANS-like
TrEMBL	A0A3L6QHQ5	1e-118	A0A3L6QHQ5_PANMI; Zinc finger protein CONSTANS-LIKE 5-like
STRING	Pavir.Aa03360.1.p	1e-108	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3844	23	48