PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00122.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HB-other

Protein Properties

Length: 342aa MW: 36970.3 Da PI: 6.1214

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00122.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21.8	3.3e-07	17	75	10	56
HHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS Homeobox 10 eqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56 +++ e+e+ ++ ++ p ++ + LA+k ++ +qV +WFqNrR+ ++ Zmw_sc00122.1.g00040.1.sm.mkhc 17 SEVAEMEARLKQlhHSVPGRDVLQSLADKFsasperagrvAVQPKQVWNWFQNRRYSYR 75 56666666666555667888888888888888888888889***************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	0.0021	7	81	IPR001356	Homeobox domain
PROSITE profile	PS50071	9.426	13	77	IPR001356	Homeobox domain
CDD	cd00086	9.23E-5	13	75	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.2E-6	13	77	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.55E-9	13	77	IPR009057	Homeodomain-like
Pfam	PF00046	1.4E-4	17	75	IPR001356	Homeobox domain
Pfam	PF16719	2.7E-21	139	217	IPR032001	SAWADEE domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0003682	Molecular Function	chromatin binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MGRPPSSGAP AFRFLPSEVA EMEARLKQLH HSVPGRDVLQ SLADKFSASP ERAGRVAVQP 60 KQVWNWFQNR RYSYRAKGVR PAQQPPPPPS KMTPSGADRV QHATAASAFR AAQTPAAAAG 120 ANPGSTPSAG KGAVEGAPIE FEAKSARDGA WYDVAGFLSH RMFETGDPEV RVRFSGFGAE 180 EDEWVNVRKC VRQRSLPCEA TECVAVLPGD LILCFQEIVP LRKVCRRPET DYRLQILHAS 240 RAAAAASDVH APPSEVRMES ASEEKSPAGQ EPVKQHKMMD VNTDEVTMVS DQGEAAGKTA 300 PPTPSAQAET HNNSSSDVDA EPAPVVEVDD ERQVVDKMEE GK

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MGRPPSSGAP AFRFLPSEVA EMEARLKQLH HSVPGRDVLQ SLADKFSASP ERAGRVAVQP  60
KQVWNWFQNR RYSYRAKGVR PAQQPPPPPS KMTPSGADRV QHATAASAFR AAQTPAAAAG  120
ANPGSTPSAG KGAVEGAPIE FEAKSARDGA WYDVAGFLSH RMFETGDPEV RVRFSGFGAE  180
EDEWVNVRKC VRQRSLPCEA TECVAVLPGD LILCFQEIVP LRKVCRRPET DYRLQILHAS  240
RAAAAASDVH APPSEVRMES ASEEKSPAGQ EPVKQHKMMD VNTDEVTMVS DQGEAAGKTA  300
PPTPSAQAET HNNSSSDVDA EPAPVVEVDD ERQVVDKMEE GK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4iup_A	1e-28	137	217	2	82	SAWADEE HOMEODOMAIN HOMOLOG 1
4iup_B	1e-28	137	217	2	82	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_A	1e-28	137	217	2	82	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B	1e-28	137	217	2	82	SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A	1e-28	137	217	2	82	SHH1 SAWADEE
4iur_B	1e-28	137	217	2	82	SHH1 SAWADEE
4iut_A	1e-28	137	217	2	82	SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B	1e-28	137	217	2	82	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A	1e-28	137	217	2	82	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B	1e-28	137	217	2	82	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A	1e-28	137	217	2	82	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B	1e-28	137	217	2	82	SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004956551.1	1e-169	protein SAWADEE HOMEODOMAIN HOMOLOG 2
Refseq	XP_022680276.1	1e-169	protein SAWADEE HOMEODOMAIN HOMOLOG 2
Refseq	XP_022680277.1	1e-169	protein SAWADEE HOMEODOMAIN HOMOLOG 2
Refseq	XP_022680278.1	1e-169	protein SAWADEE HOMEODOMAIN HOMOLOG 2
Swissprot	Q8RWJ7	2e-89	SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBL	A0A1D6EP15	1e-171	A0A1D6EP15_MAIZE; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
STRING	Si030167m	1e-169	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4190	29	48