PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00115.1.g00410.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 401aa MW: 44749.4 Da PI: 12.1166

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00115.1.g00410.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	94.6	4.5e-30	238	288	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s Zmw_sc00115.1.g00410.1.am.mk 238 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFAS 288 79***********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.9E-41	230	289	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	31.763	230	290	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-30	232	252	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.19E-28	232	290	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	232	286	IPR002100	Transcription factor, MADS-box
CDD	cd00265	6.13E-38	232	288	No hit	No description
Pfam	PF00319	9.0E-27	239	286	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-30	252	267	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-30	267	288	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MGGHCTAQRG AACVGIANRA RPRPLRFHDQ SSLRSPRPDP IPNQPLLPLE KQGRIRSQPP 60 WPGTSVSAHR RRRPMAMRLH YRGGGPACPA RFFPRRVITL RDRLLYLARR DVFYLHAAGH 120 ASPPPHAAAR PRHGGFRLRL RVIRSSSIFP CWPAPPATRY RSAAPNLVHS SFHASGRGST 180 RKETRGEAAV WLRPPSPPAF LASSLCHFWE CSRVPLDSHF RERTRRSARM VRGKTEMKRI 240 ENATSRQVTF SKRRNGLLKK AFELSVLCDA EVALIVFSPR GKLYEFASAA RCVCRSISSP 300 PSLFTRPLLL SSRRVSHESA DCKSNSVSNS RFAAATSASN AGAFQATPSR RPSGVRNAPK 360 PSFDCCEAGM ESEWKRRAGR DQQLRGQTPM AATCEWRNIV L

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MGGHCTAQRG AACVGIANRA RPRPLRFHDQ SSLRSPRPDP IPNQPLLPLE KQGRIRSQPP  60
WPGTSVSAHR RRRPMAMRLH YRGGGPACPA RFFPRRVITL RDRLLYLARR DVFYLHAAGH  120
ASPPPHAAAR PRHGGFRLRL RVIRSSSIFP CWPAPPATRY RSAAPNLVHS SFHASGRGST  180
RKETRGEAAV WLRPPSPPAF LASSLCHFWE CSRVPLDSHF RERTRRSARM VRGKTEMKRI  240
ENATSRQVTF SKRRNGLLKK AFELSVLCDA EVALIVFSPR GKLYEFASAA RCVCRSISSP  300
PSLFTRPLLL SSRRVSHESA DCKSNSVSNS RFAAATSASN AGAFQATPSR RPSGVRNAPK  360
PSFDCCEAGM ESEWKRRAGR DQQLRGQTPM AATCEWRNIV L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	1e-15	230	288	1	59	MEF2C
5f28_B	1e-15	230	288	1	59	MEF2C
5f28_C	1e-15	230	288	1	59	MEF2C
5f28_D	1e-15	230	288	1	59	MEF2C

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP47773	2	3