PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00115.1.g00360.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 271aa MW: 29616.6 Da PI: 10.1474

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00115.1.g00360.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	95.4	3.8e-30	31	142	1	98
EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvk 70 f+kv tpsdv+k++rlv+pk++ae++ +++ ++ l++ed++g+ W+++++y+++s++yv+tkGW++Fvk Zmw_sc00115.1.g00360.1.sm.mk 31 FEKVVTPSDVGKLNRLVIPKQHAERYfpalgsaaseaASNEGKGLVLSFEDREGKAWRFRYSYWNSSQSYVMTKGWSRFVK 111 99*****************************999988888999******************************** PP HHT--TT-EEEEEE-.SS..SEE..EEEEE- CS B3 71 angLkegDfvvFkld.gr..sefelvvkvfr 98 +++L +gD+v F + g+ ++++++ ++r Zmw_sc00115.1.g00360.1.sm.mk 112 EKRLGAGDTVAFARGtGDaaARGRFFIDFCR 142 **********9443332456666666666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.5E-38	27	128	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.57E-29	28	126	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.63E-27	29	123	No hit	No description
PROSITE profile	PS50863	14.17	31	144	IPR003340	B3 DNA binding domain
SMART	SM01019	8.4E-22	31	144	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.9E-28	31	143	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MEFGRIAAAQ EDSERARGGG GVAWLEREHM FEKVVTPSDV GKLNRLVIPK QHAERYFPAL 60 GSAASEAASN EGKGLVLSFE DREGKAWRFR YSYWNSSQSY VMTKGWSRFV KEKRLGAGDT 120 VAFARGTGDA AARGRFFIDF CRRRQDVAFL QPSALQRLPL PSVPISCPWP QEYGAYNPAA 180 APNRHVLFLR PQMPSAVVLT SVPVRVAASA VEATRSKRVR LFGVNLDSPP VMEDNSRATG 240 TVSTFLQLPS PSSSTSSSTA GKDLCSLDLG L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	2e-53	26	143	3	113	B3 domain-containing transcription factor NGA1
5os9_B	2e-53	26	143	3	113	B3 domain-containing transcription factor NGA1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004983810.1	1e-123	putative B3 domain-containing protein Os10g0537100
Swissprot	Q8LNN8	3e-93	Y1071_ORYSJ; Putative B3 domain-containing protein Os10g0537100
TrEMBL	A0A1E5V5B2	1e-127	A0A1E5V5B2_9POAL; Putative B3 domain-containing protein
STRING	Si039972m	1e-122	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP583	37	168

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]