PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00113.1.g00280.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YB
Protein Properties Length: 385aa    MW: 41525.2 Da    PI: 7.5957
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00113.1.g00280.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB182.92.7e-57192287297
                         NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 
                                   reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yv+p
  Zmw_sc00113.1.g00280.1.am.mk 192 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVDP 272
                                   89******************************************************************************* PP

                         NF-YB  83 lkvylkkyrelegek 97 
                                   lk yl+k+re+ege+
  Zmw_sc00113.1.g00280.1.am.mk 273 LKHYLHKFREIEGER 287
                                   ************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.2E-54189305IPR009072Histone-fold
SuperFamilySSF471131.07E-39194299IPR009072Histone-fold
PfamPF008081.9E-27197261IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.2E-19225243No hitNo description
PROSITE patternPS006850228244IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.2E-19244262No hitNo description
PRINTSPR006152.2E-19263281No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MSVGDDSSVL CLLPPVCSSG PSANPTWHTG NSCTSWPGRR PTCSRTHCNG QDASDVASIH  60
SDVIARWQIL IRKRTVGGTP RSYLDAFLSA RSNGPAIFHH RSHFRAVENA LLEEIFRSSA  120
VDPVRALLTA YRDWLERFDE ISRSFSALLR LLYRALFLDL RLQRERSEAA MPDSDNDSGG  180
PSNAGGDLSS SREQDRFLPI ANVSRIMKKA LPANAKISKD AKETVQECVS EFISFITGEA  240
SDKCQREKRK TINGDDLLWA MTTLGFEEYV DPLKHYLHKF REIEGERAAA SSGGGSTAAA  300
QQQQSDTSRN VNAGGVAYGG YGGPGAGGMM MMMGQPPMYG GSPQQQQQQQ HQLQHHMATG  360
GGGGYGHLGG GSSSASSGLG GQDRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A1e-44186282197NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331