PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00113.1.g00140.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 892aa    MW: 99410.3 Da    PI: 5.27
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00113.1.g00140.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-16601648148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg+WT+ Ed++lv +++++G g+W t +++ g++R++k+c++rw++yl
  Zmw_sc00113.1.g00140.1.am.mk 601 RGAWTAMEDDILVSYIRKHGEGRWGTLPSRAGLKRCGKSCRLRWLNYL 648
                                   89********************************************97 PP
2Myb_DNA-binding42.81.2e-13654722147
                                   TSSS-HHHHHHHHHHHHHTTTT.......................-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.......................tWktIartmgkgRtlkqcksrwqky 47 
                                   rg+ + +E+el+++++++lG++                       +W++Ia +++ gRt++++k++w++ 
  Zmw_sc00113.1.g00140.1.am.mk 654 RGNISNDEEELIIRLHRLLGNRrsricwqcsvssesslggdepviRWSLIAGRLP-GRTDNEIKNYWNTT 722
                                   78899**************************************************.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF040914.5E-70247557IPR007225Exocyst complex subunit Sec15-like
Gene3DG3DSA:1.10.10.602.6E-21592651IPR009057Homeodomain-like
PROSITE profilePS5129421.651596652IPR017930Myb domain
SMARTSM007171.3E-13600650IPR001005SANT/Myb domain
SuperFamilySSF466892.81E-20601652IPR009057Homeodomain-like
PfamPF002492.2E-14601648IPR001005SANT/Myb domain
CDDcd001677.40E-10603648No hitNo description
Gene3DG3DSA:1.10.10.603.8E-19652726IPR009057Homeodomain-like
PROSITE profilePS5129410.562653727IPR017930Myb domain
SMARTSM007171.0E-11653725IPR001005SANT/Myb domain
PfamPF002495.7E-11654722IPR001005SANT/Myb domain
CDDcd001676.30E-8658723No hitNo description
SuperFamilySSF466892.81E-20695722IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006904Biological Processvesicle docking involved in exocytosis
GO:0000145Cellular Componentexocyst
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 892 aa     Download sequence    Send to blast
MTAQPKKRSA IVESGDGGLG VGIATFIANG EDLGPIIRHS FESGKPEALM HGLRSIVKKK  60
EVEIEELCRL HYEDFILAVD ELRGVLVDAE ELKSMLSGEN SHLQEVSTGQ LLKLDELYEL  120
YSVKKNVGEA VTTLKICVKV ISLYGLLSES QVETTWETAL ARVTSTLEEQ LSRMRVASHF  180
LVIKDYVTLL GATVRKYGYP ITQLIEVLEK SRDKYHQLLL LERRKQIDET LTNDSYEQMI  240
IKKEDDYNMN VTALGLEPDD AIPNFPYVAP FSSSVPDVCR IVRSFVEDSV NYLSYGGLMN  300
KHDVVRTYLD RLLIEVLNDS LLNMIYARSL AMSQMMQLAG NISVLEQTCG MFLLHSSLLC  360
GIPKRNAERS HSTLTARAVL KASQNAVYNA LINLANFKVD EFMILLENVN WIAEEAPDNS  420
NDYMNEVVIY LETLISTAQE ILPLETLYKI ISGIMRHISD SIMSTLLNEG VKRFTVNAVL  480
GLDIDLKMLE AFADEKFETT GLSISGKETS FRDCLVEIRQ LINLLLSSQP ENFMNPVIRQ  540
RNYGSLDYKK LAIICDKYKD AADGIFGSLS NRNAKQSARK RKGEAPEMGR KPCCSKEGLN  600
RGAWTAMEDD ILVSYIRKHG EGRWGTLPSR AGLKRCGKSC RLRWLNYLRP GIKRGNISND  660
EEELIIRLHR LLGNRRSRIC WQCSVSSESS LGGDEPVIRW SLIAGRLPGR TDNEIKNYWN  720
TTLGKKARRE SSTRSKQQHQ ANAARTSSGP ARTASGAAPD ATAIGWPSPE PNTSPVRTKA  780
LRCTARLPVP PRAVAQASRG SPPEEVEAGD DHVQDAVEAA APAAEEQQDC LPEDDLSIDL  840
DFDLGDLAFL SPWRDEAADG MVRPDDRFVG GESDMEALLL GPAGDDLEFS WF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-2059972625127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane during regulated or polarized secretion. Involved in polarized cell growth and organ morphogenesis. During cytokinesis, involved in cell plate initiation, cell plate maturation and formation of new primary cell wall.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791845.10.0exocyst complex component SEC15A-like isoform X2
SwissprotQ9LXX61e-171SC15A_ARATH; Exocyst complex component SEC15A
TrEMBLA0A2T8I4J40.0A0A2T8I4J4_9POAL; Exocyst complex component
STRINGSi034321m0.0(Setaria italica)
Publications ? help Back to Top
  1. Hála M, et al.
    An exocyst complex functions in plant cell growth in Arabidopsis and tobacco.
    Plant Cell, 2008. 20(5): p. 1330-45
    [PMID:18492870]
  2. Chong YT, et al.
    Characterization of the Arabidopsis thaliana exocyst complex gene families by phylogenetic, expression profiling, and subcellular localization studies.
    New Phytol., 2010. 185(2): p. 401-19
    [PMID:19895414]
  3. Safavian D, et al.
    RNA Silencing of Exocyst Genes in the Stigma Impairs the Acceptance of Compatible Pollen in Arabidopsis.
    Plant Physiol., 2015. 169(4): p. 2526-38
    [PMID:26443677]