PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00107.1.g00310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 327aa MW: 35703.2 Da PI: 7.0817 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 37.1 | 6.2e-12 | 105 | 126 | 2 | 23 |
--SS-EEEEEEE--TT-SS-EE CS WRKY 2 dDgynWrKYGqKevkgsefprs 23 +DgynWrKYGqK+vkgse+pr Zmw_sc00107.1.g00310.1.sm.mkhc 105 EDGYNWRKYGQKHVKGSENPRR 126 8*******************96 PP | |||||||
2 | WRKY | 108.8 | 2.6e-34 | 245 | 303 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++dpk v++tYeg+Hnhe Zmw_sc00107.1.g00310.1.sm.mkhc 245 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHNGCPVRKHVERASHDPKSVITTYEGKHNHE 303 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-9 | 96 | 126 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 11.508 | 99 | 149 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.71E-8 | 103 | 126 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.5E-5 | 104 | 132 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.1E-7 | 105 | 126 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.0E-38 | 230 | 305 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-30 | 237 | 305 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.343 | 240 | 305 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-39 | 245 | 304 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.8E-27 | 246 | 303 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MAAIINKSTH PDILPSPRNK SVGNGHEDEG SQDFEFKPHL NSSTQSMDST HKVNGSSGPN 60 QPVAMVGLSD SMPSEVGTSE LQQMNSSENA VQETHSENVA EKSAEDGYNW RKYGQKHVKG 120 SENPRRRHNH PKPQPNRRLT AGAVPSSQGE EKYDVATAEV KSGVSDLCNA VHSAGMIEPA 180 LGPASDDDID AGGGRPYPGD DANEDDDLDS KRRKMESAGI DAALMGKPNR EPRVVVQTVS 240 EVDILDDGYR WRKYGQKVVK GNPNPRSYYK CTHNGCPVRK HVERASHDPK SVITTYEGKH 300 NHEVPASRNA SHEISTAPMK TTRRKGP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-38 | 236 | 306 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 6e-38 | 236 | 306 | 8 | 78 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015695163.1 | 1e-177 | PREDICTED: WRKY transcription factor SUSIBA2-like | ||||
Swissprot | Q6VWJ6 | 1e-174 | WRK46_HORVU; WRKY transcription factor SUSIBA2 | ||||
TrEMBL | A0A0E0EDN9 | 1e-177 | A0A0E0EDN9_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI07G17160.1 | 1e-178 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6740 | 38 | 51 |