PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00107.1.g00300.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 495aa    MW: 54621.9 Da    PI: 5.9857
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00107.1.g00300.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS434.76.8e-1331254941373
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 
                                   l+e L++cA+av++++  +++ ++ +l++++s +g+p++Rl ay++e+L arla s++++yk+l+++e +    se l+++
  Zmw_sc00107.1.g00300.1.sm.mk 125 LKEMLITCARAVEENNSFAINLMIPELRKMVSVSGEPLERLGAYMVEGLVARLAASGNSIYKSLKCKEPK---GSELLSYM 202
                                   5789*****************************************************************9...9******* PP

                          GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeelee 160
                                   ++++e++P++kf+++ aN aI ea++ge+r+HiiDf i qG QW++LlqaLa+Rp+gpp +RiTg++++ s   +   le 
  Zmw_sc00107.1.g00300.1.sm.mk 203 SFLYEACPYFKFGYMSANGAIAEAIKGEDRIHIIDFHIAQGSQWLCLLQALAARPGGPPFVRITGIDDSFSAyaRGGGLEL 283
                                   ********************************************************************777688999**** PP

                          GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241
                                   +g+rL+++A+ ++vpfef+  va + +d+e+e+L + pgEa+aVn+ l+lh+++de vs++++rd++L+lvkslsPkv+++
  Zmw_sc00107.1.g00300.1.sm.mk 284 VGKRLSHIAALCKVPFEFHG-VAISGNDIEVEHLGIVPGEAVAVNFTLELHHIPDEAVSTANHRDRILRLVKSLSPKVLTL 363
                                   ********************.6889******************************************************** PP

                          GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                                   veqe+++n+++F++rf+e+++yy+a+f+s++  lpr+++eri++E+++l+reivn+vaceg+er+erhe ++kW++rl++a
  Zmw_sc00107.1.g00300.1.sm.mk 364 VEQESNTNTAPFAQRFAETFDYYTAIFESIDLALPRDHRERINMEQHCLAREIVNLVACEGEERVERHELFGKWKSRLTMA 444
                                   ********************************************************************************* PP

                          GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                   GF+p pls  +++++k+ll++++ + y++ e++g l+lgWk+rpLv+ SaW
  Zmw_sc00107.1.g00300.1.sm.mk 445 GFRPSPLSALVNDTIKTLLQTYSPN-YKLLERDGVLYLGWKNRPLVVSSAW 494
                                   ***********************55.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.4799476IPR005202Transcription factor GRAS
PfamPF035142.4E-130125494IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MKSHSPDAGS ESHETHQQYT LDSFAGSSCM RHDPPSNHSH PTESGSGSPL SQEDSQSAST  60
NGNGSPVSSV TEDPDDLKQK LKDLESAMLG TDSEIVNSLE VSVANKLSLG HEEWVHMMSM  120
PRGNLKEMLI TCARAVEENN SFAINLMIPE LRKMVSVSGE PLERLGAYMV EGLVARLAAS  180
GNSIYKSLKC KEPKGSELLS YMSFLYEACP YFKFGYMSAN GAIAEAIKGE DRIHIIDFHI  240
AQGSQWLCLL QALAARPGGP PFVRITGIDD SFSAYARGGG LELVGKRLSH IAALCKVPFE  300
FHGVAISGND IEVEHLGIVP GEAVAVNFTL ELHHIPDEAV STANHRDRIL RLVKSLSPKV  360
LTLVEQESNT NTAPFAQRFA ETFDYYTAIF ESIDLALPRD HRERINMEQH CLAREIVNLV  420
ACEGEERVER HELFGKWKSR LTMAGFRPSP LSALVNDTIK TLLQTYSPNY KLLERDGVLY  480
LGWKNRPLVV SSAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-651274956375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958142.10.0chitin-inducible gibberellin-responsive protein 2
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A1E5VF810.0A0A1E5VF81_9POAL; Chitin-inducible gibberellin-responsive protein 2
STRINGSi029418m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]