PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00107.1.g00160.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 400aa MW: 43896.2 Da PI: 6.9578

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00107.1.g00160.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.4	1.2e-18	62	115	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq+e Le F+++r++ + ++ +LA++lgL+ +qV vWFqNrRa++k Zmw_sc00107.1.g00160.1.am.mk 62 KKRRLSDEQVEMLELSFREERKLETGRKVHLAAELGLDPKQVAVWFQNRRARHK 115 45589***********************************************99 PP
2	HD-ZIP_I/II	113.2	1.7e-36	62	152	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 kkrrls+eqv++LE sF+ee+kLe+ rKv+la eLgl+p+qvavWFqnrRAR+k+k lE+++ +Lk+a+da ++++Le+ Zmw_sc00107.1.g00160.1.am.mk 62 KKRRLSDEQVEMLELSFREERKLETGRKVHLAAELGLDPKQVAVWFQNRRARHKSKLLEEEFVKLKQAHDAAILHKCHLEN 142 9****************************************************************************** PP HD-ZIP_I/II 83 eveeLreelk 92 ev +L+e+l+ Zmw_sc00107.1.g00160.1.am.mk 143 EVLRLKERLM 152 ****9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.471	57	117	IPR001356	Homeobox domain
SMART	SM00389	4.9E-17	60	121	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.04E-16	61	116	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-17	62	115	IPR009057	Homeodomain-like
Pfam	PF00046	6.3E-16	62	115	IPR001356	Homeobox domain
CDD	cd00086	6.65E-15	62	117	No hit	No description
PRINTS	PR00031	2.8E-5	88	97	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	92	115	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.8E-5	97	113	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MEQYAEQQHQ LFPSSSVDLD SSLLAATGAA QGEERPRARR RRRRAARCGG ADGVEVDAED 60 PKKRRLSDEQ VEMLELSFRE ERKLETGRKV HLAAELGLDP KQVAVWFQNR RARHKSKLLE 120 EEFVKLKQAH DAAILHKCHL ENEVLRLKER LMVAEEELTR LRSAGSHAIS GDGVDVMGRV 180 VCSGSPSSSF SAGTCHQQLG VGGVDDDLIY VPDVADYVYA DNTVVEWFSL FGLMEFYLGS 240 PCIRGRKRPS HELAFQFTSP WSIEANAPIE TAAPGSFVEE DITISDKVPG ASAATLARSD 300 TREHATRTAD LAVQATAGRA IDALNMGTAT SELIKPLEQR PRPSRRSHSP QPQAFLQQPD 360 KQQATTDATG DTNAAGGHAR SLARSRARGK PAPPRDFALS

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MEQYAEQQHQ LFPSSSVDLD SSLLAATGAA QGEERPRARR RRRRAARCGG ADGVEVDAED  60
PKKRRLSDEQ VEMLELSFRE ERKLETGRKV HLAAELGLDP KQVAVWFQNR RARHKSKLLE  120
EEFVKLKQAH DAAILHKCHL ENEVLRLKER LMVAEEELTR LRSAGSHAIS GDGVDVMGRV  180
VCSGSPSSSF SAGTCHQQLG VGGVDDDLIY VPDVADYVYA DNTVVEWFSL FGLMEFYLGS  240
PCIRGRKRPS HELAFQFTSP WSIEANAPIE TAAPGSFVEE DITISDKVPG ASAATLARSD  300
TREHATRTAD LAVQATAGRA IDALNMGTAT SELIKPLEQR PRPSRRSHSP QPQAFLQQPD  360
KQQATTDATG DTNAAGGHAR SLARSRARGK PAPPRDFALS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	34	43	RPRARRRRRR
2	38	46	RRRRRRAAR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002460922.1	1e-93	homeobox-leucine zipper protein HOX14
Swissprot	Q7XI85	2e-84	HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14
TrEMBL	A0A1E5VQE4	4e-95	A0A1E5VQE4_9POAL; Homeobox-leucine zipper protein HOX14
STRING	Sb02g037560.1	5e-93	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2006	38	101

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]