PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00106.1.g00340.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 397aa    MW: 44474.1 Da    PI: 9.9471
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00106.1.g00340.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox201.2e-063203522355
                                   SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                      Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                   r +++ e++ LA ++gL+++q+ +WF N+R ++
  Zmw_sc00106.1.g00340.1.am.mk 320 RRLQELEKAALAYSTGLDTKQINNWFINQRKRH 352
                                   667888999*********************885 PP
2ELK34.93.3e-12258279122
                           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                   ELK++Ll+KYsgyL+sL+ E+s
  Zmw_sc00106.1.g00340.1.am.mk 258 ELKNRLLNKYSGYLSSLWRELS 279
                                   9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-155599IPR005540KNOX1
PfamPF037902.1E-185797IPR005540KNOX1
PfamPF037891.8E-9258279IPR005539ELK domain
SMARTSM011889.5E-7258279IPR005539ELK domain
PROSITE profilePS5121310.51258278IPR005539ELK domain
SMARTSM003891.2E-4280359IPR001356Homeobox domain
SuperFamilySSF466895.13E-12280358IPR009057Homeodomain-like
CDDcd000861.01E-8281355No hitNo description
Gene3DG3DSA:1.10.10.604.1E-22283356IPR009057Homeodomain-like
PfamPF059203.2E-10298351IPR008422Homeobox KN domain
PROSITE profilePS500719.297312355IPR001356Homeobox domain
PROSITE patternPS000270330353IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MEPPLSLPAT SSKSTTTRFD LSSDQRASTP PAEVPKPPPA ASEPSRQSNN EGGSEILKAK  60
IVSHHLYPAI LRAFIDCRKV GAPPEVVGRL SAVASEVEMN SNDRQEQPED PELDQFMDSK  120
YPSAHRQNFG AFVVWVACVV WPTTAPSRNG SSRSSACSRR RPGIACRIAK GYSPWQRQRL  180
CSSCSSSHLL LHALHRSNRL ADRAELHYLL SCPVERAHQP SDMNDKSYEL GGGSSNEDEH  240
ETGGDVDDLP KTSGEDKELK NRLLNKYSGY LSSLWRELSR KKKKGKLPRE ARQKLLHWWQ  300
MHYRWPYPSV HLRPLMILSR RLQELEKAAL AYSTGLDTKQ INNWFINQRK RHWKPAPPPK  360
LALNYRLGGA SSSTAHHAAL HAEGQYFTGG SAYSRGP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464092.14e-69homeobox protein knotted-1-like 4
SwissprotQ75LX76e-55KNOS4_ORYSJ; Homeobox protein knotted-1-like 4
TrEMBLA0A1D6KYU81e-109A0A1D6KYU8_MAIZE; Homeobox protein knotted-1-like 1
STRINGSb01g012200.11e-68(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47462950