PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc00103.1.g00160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 131aa MW: 15027.4 Da PI: 10.757 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 29.3 | 1.2e-09 | 11 | 45 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C + +Tp+WR +++LCnaC ++ r g+ Zmw_sc00103.1.g00160.1.am.mk 11 CLQCDSAETPQWRLRLLRQIMLCNACDVRLRADGV 45 899***********************999998776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 11.095 | 5 | 59 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.09E-9 | 5 | 53 | No hit | No description |
SMART | SM00401 | 2.8E-5 | 5 | 56 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 7.3E-9 | 6 | 59 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 1.1E-7 | 11 | 45 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 131 aa Download sequence Send to blast |
MVRPTKKMKR CLQCDSAETP QWRLRLLRQI MLCNACDVRL RADGVRRETE QRAAQRRARH 60 AAACGAGLTG SWQALVKDHQ PVTLFLQVDL HRRCGYRAVH QVRGGVDQQV AEPAVAMPWA 120 TMNEQHREIF I |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP24941 | 2 | 5 |