PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00100.1.g00270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NF-YA | ||||||||
Protein Properties | Length: 214aa MW: 23793.1 Da PI: 10.3298 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 104.9 | 7.1e-33 | 65 | 121 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e ekk+ k+rkpylheSRh+hA+rR+Rg+gGrF Zmw_sc00100.1.g00270.1.sm.mkhc 65 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-VKARKPYLHESRHQHAMRRARGNGGRF 121 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.8E-36 | 63 | 124 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.498 | 64 | 124 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.3E-28 | 66 | 121 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 6.6E-25 | 67 | 89 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 69 | 89 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 6.6E-25 | 98 | 121 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
WKHESRKEPC HITYACFGVR ASAAYQYPDA YYSGMVGPYG TQPGTQFQLH GLTHSRMPLP 60 LEISEEPVYV NAKQYHGILR RRQSRAKAEL EKKVVKARKP YLHESRHQHA MRRARGNGGR 120 FLNTKKIDNG TPNGKADPKK GNAYTLETGI KCSSIALPST FCKAVQGWRP EQNAIWVQKP 180 VPSVEFLLVG GAGRPTASSL SRIGSGPEIY GESL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 3e-22 | 65 | 129 | 2 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021304143.1 | 4e-72 | nuclear transcription factor Y subunit A-1-like | ||||
Refseq | XP_021304146.1 | 4e-72 | nuclear transcription factor Y subunit A-1-like | ||||
Swissprot | Q945M9 | 2e-39 | NFYA9_ARATH; Nuclear transcription factor Y subunit A-9 | ||||
TrEMBL | A0A1B6QIQ6 | 1e-70 | A0A1B6QIQ6_SORBI; Uncharacterized protein | ||||
STRING | Sb01g011220.2 | 2e-71 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8205 | 36 | 49 |
Publications ? help Back to Top | |||
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