PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00099.1.g00550.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 427aa MW: 46470.1 Da PI: 6.7074

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00099.1.g00550.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.7	4.6e-17	58	102	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE+e++++a k++G W+ I +++g ++t+ q++s+ qk+ Zmw_sc00099.1.g00550.1.sm.mk 58 REKWTEEEHEKFLEALKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 102 789***************55.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.36E-16	52	106	IPR009057	Homeodomain-like
PROSITE profile	PS51294	22.056	53	107	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-10	55	105	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.8E-16	56	105	IPR006447	Myb domain, plants
SMART	SM00717	1.6E-14	57	105	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-14	58	101	IPR001005	SANT/Myb domain
CDD	cd00167	1.12E-11	60	103	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MEAAVAQVEE RDGADSSCLR RPLDVVKPPV VADAMQPKER MDGYPVKVRK PYTITKQREK 60 WTEEEHEKFL EALKLYGRSW RQIQEHIGTK TAVQIRSHAQ KFFSKVVREP GASNVIEIPP 120 PRPKRKPLHP YPRKCANSST VANLKLAPVS PSSGSDQENG SPVSVLSAVQ SDAFGSSISN 180 LSTGCTSPVS SDDGNNARVM VNGEEILPSK QAEIDQSPKE IKQDNSDGDL SEEGSLRETS 240 LKLFGKTVTI PDPMKVCSSD GGRGEGERCT QSACKEIFEA SSIGSATTCA APTGWVLPYH 300 YFPYHMGESM DPRISAPPHV WWPYYSFPVS QPRELGAVLH GEGTGESDTG KSPSVESSAD 360 SMGNVQTRTP IDCEVAKESL GAIQTPDSAL CFELKPSVNS AFVPVKPSNR GSQSTRGFVP 420 YKRCKVE

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MEAAVAQVEE RDGADSSCLR RPLDVVKPPV VADAMQPKER MDGYPVKVRK PYTITKQREK  60
WTEEEHEKFL EALKLYGRSW RQIQEHIGTK TAVQIRSHAQ KFFSKVVREP GASNVIEIPP  120
PRPKRKPLHP YPRKCANSST VANLKLAPVS PSSGSDQENG SPVSVLSAVQ SDAFGSSISN  180
LSTGCTSPVS SDDGNNARVM VNGEEILPSK QAEIDQSPKE IKQDNSDGDL SEEGSLRETS  240
LKLFGKTVTI PDPMKVCSSD GGRGEGERCT QSACKEIFEA SSIGSATTCA APTGWVLPYH  300
YFPYHMGESM DPRISAPPHV WWPYYSFPVS QPRELGAVLH GEGTGESDTG KSPSVESSAD  360
SMGNVQTRTP IDCEVAKESL GAIQTPDSAL CFELKPSVNS AFVPVKPSNR GSQSTRGFVP  420
YKRCKVE

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator for cold-responsive gene expression and cold tolerance. Part of a regulatory feedback loop that controls a subset of the circadian outputs and modulates the central oscillator. Negatively self-regulates its own expression. {ECO:0000269\|PubMed:17587236, ECO:0000269\|PubMed:23371945}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by light. {ECO:0000269\|PubMed:17587236, ECO:0000269\|PubMed:19805390}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004966527.1	0.0	uncharacterized protein LOC101785788
Swissprot	F4K5X6	7e-47	RVE2_ARATH; Protein REVEILLE 2
TrEMBL	A0A3L6S0P2	0.0	A0A3L6S0P2_PANMI; Uncharacterized protein
STRING	Si006457m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7783	36	47

Publications ? help Back to Top
Chaudhury A,Okada K,Raikhel NV,Shinozaki K,Sundaresan V V A weed reaches new heights down under Plant Cell, 1999. 11(10): p. 1817-26 [PMID:10521514] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Jiang Z,Xu G,Jing Y,Tang W,Lin R Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis. Nat Commun, 2016. 7: p. 12377 [PMID:27506149]