PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00094.1.g00540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 260aa MW: 28101.9 Da PI: 8.1485 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.1 | 6.4e-08 | 173 | 198 | 5 | 30 |
HHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 5 hnerErrRRdriNsafeeLrellPka 30 h ++Er+RR++iN+ f eL +++P + Zmw_sc00094.1.g00540.1.am.mk 173 HIMAERKRREKINQLFIELSTVIPGL 198 899*********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.93E-7 | 164 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 8.607 | 168 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-7 | 173 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-5 | 173 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.66E-7 | 173 | 201 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MEDSSNFMQW AMTTLHHEYH QQAVVVDGDR GEATFPSLHA LREAPQVAQM VQELITETHS 60 TNSWSSGDGE TSTDGSRVGN NNNLPPAAVD HDVWPASPNS AVRQRSCGVT NPPVSPVSWN 120 FSATAAKPQP GGDGVLVETA ARGLPDLAYG SPPARSARLK SSGSMGSLYA LDHIMAERKR 180 REKINQLFIE LSTVIPGLKK SVMVRIHCEN GKAVAVKVLA VIEELHLGIV HANVMPFSAC 240 TLIITITAKA RRKKISPLHF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 176 | 181 | ERKRRE |
2 | 177 | 182 | RKRREK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001140919.1 | 2e-62 | uncharacterized protein LOC100272997 | ||||
Refseq | XP_020403288.1 | 2e-62 | putative HLH DNA-binding domain superfamily protein isoform X1 | ||||
Refseq | XP_020403289.1 | 2e-62 | putative HLH DNA-binding domain superfamily protein isoform X1 | ||||
TrEMBL | A0A0A9NVF5 | 4e-70 | A0A0A9NVF5_ARUDO; Uncharacterized protein | ||||
STRING | GRMZM2G120021_P01 | 9e-62 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP927 | 31 | 143 |