PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00094.1.g00150.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 347aa    MW: 37819.3 Da    PI: 5.8696
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00094.1.g00150.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox283.7e-092853172254
                                   SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                      Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                   ++yps +e+ +LA ++gL+ +q+++WF N R +
  Zmw_sc00094.1.g00150.1.am.mk 285 HPYPSDSEKLRLAVSTGLSRSQISNWFINARVR 317
                                   89*****************************88 PP
2BELL45.81.5e-151392061071
                          BELL  10 akLlslleeVdk......rYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                                   akLl ll eV +      r ++y  +l  v+ssFe + g g+a+ Ytsl ++a++rhF +L+ ai  +
  Zmw_sc00094.1.g00150.1.am.mk 139 AKLLGLLSEVSRarplecRQERYFGELGRVASSFEPALGPGAAAAYTSLMSQAMARHFDNLRRAILRR 206
                                   899999999976555555899********************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.2E-1276205IPR006563POX domain
PfamPF075262.3E-2181203IPR006563POX domain
PROSITE profilePS5007111.677258321IPR001356Homeobox domain
SMARTSM003899.7E-10261325IPR001356Homeobox domain
CDDcd000863.19E-12261322No hitNo description
Gene3DG3DSA:1.10.10.601.4E-25266327IPR009057Homeodomain-like
SuperFamilySSF466894.06E-17267328IPR009057Homeodomain-like
PfamPF059201.7E-17278317IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MSTQHHEKGS PNPGDRSSSQ PPLQLEHCIR CDEHGCQGDG LKGAGSPLVL TLGPLGSAAD  60
RPCCCCSCGA APGPTLETVA VLRGSRYLRP AQELLSEAVR VSDDLDGDGE EAEQHERLDA  120
GARRAMRGAA RSGADGVQAK LLGLLSEVSR ARPLECRQER YFGELGRVAS SFEPALGPGA  180
AAAYTSLMSQ AMARHFDNLR RAILRRLRLH AAARRRRAAS LQEAVTDDEE DDDDEEPVTD  240
EVDRVARRTK LAAAARAEQA WRPLRGLPEG SLAVLRAWLF DHFLHPYPSD SEKLRLAVST  300
GLSRSQISNW FINARVRLWK PMIEEMYNEE LCEDDPLSNS TSGASSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A7e-17267325563Homeobox protein Meis2
4xrm_B7e-17267325563Homeobox protein Meis2
5bng_A6e-17267325159Homeobox protein Meis2
5bng_B6e-17267325159Homeobox protein Meis2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205216RLRLHAAARRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022678610.11e-107BEL1-like homeodomain protein 10 isoform X1
RefseqXP_022678611.11e-107BEL1-like homeodomain protein 10 isoform X1
RefseqXP_022678612.11e-107BEL1-like homeodomain protein 10 isoform X1
TrEMBLA0A2T7C2N21e-102A0A2T7C2N2_9POAL; Uncharacterized protein
STRINGPavir.Ia00979.1.p1e-102(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77153146