PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00094.1.g00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GATA | ||||||||
Protein Properties | Length: 281aa MW: 29860.3 Da PI: 4.972 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 51.6 | 1.3e-16 | 182 | 218 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCgt++ Tp +Rrgp g++tLCnaCGl+++ k++ Zmw_sc00094.1.g00050.1.am.mkhc 182 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANKRT 218 *********************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 11.26 | 70 | 105 | IPR010399 | Tify domain |
Pfam | PF06200 | 3.9E-7 | 74 | 95 | IPR010399 | Tify domain |
Pfam | PF06203 | 1.0E-14 | 110 | 150 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 13.295 | 110 | 152 | IPR010402 | CCT domain |
SMART | SM00401 | 6.0E-9 | 176 | 229 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.99E-10 | 180 | 226 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.0E-13 | 181 | 220 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.51E-14 | 181 | 235 | No hit | No description |
Pfam | PF00320 | 3.8E-14 | 182 | 218 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 182 | 209 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
SPQPPAMSDA AAARDADAEM RDAAASTGAP PGDEGESDTE DDDDDDVDDE EPPAPAPAQG 60 ASAPEPVSAM TADPNQLTML FQGEVYVFDS VAPDKGYDDI LRRTDIPAKR VASLIRFREK 120 RKDRNFDKKI RYAVRKEVAL RMQRQKGQFA GRANLEGESS ATGCDPASRV SGQDFPCRES 180 KCQNCGTSEK MTPAMRRGPA GPRTLCNACG LMWANKRTLR SCPKAKVKSP MIASNLAVSQ 240 SGSDNKAPLI PKNDYVAASD GGVRGNCVPA GAADIEGPKA L |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628049.1 | 1e-108 | GATA transcription factor 18 | ||||
Swissprot | Q10F25 | 1e-109 | GAT18_ORYSJ; GATA transcription factor 18 | ||||
TrEMBL | A0A0D9ZBQ0 | 1e-107 | A0A0D9ZBQ0_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM03G30120.1 | 1e-108 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3460 | 37 | 73 |
Publications ? help Back to Top | |||
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