PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00085.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 401aa MW: 44192.6 Da PI: 6.8035

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00085.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.8	6.1e-11	244	288	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h Er+RR+++N++f Lr++lP+ +K + a++L +A +Y++ L Zmw_sc00085.1.g00050.1.am.mk 244 HVLSERKRREKLNDSFKVLRTVLPPG-----TKKDRASTLIRARDYVNTL 288 7789******************97.....79***********9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.40E-13	237	293	No hit	No description
SuperFamily	SSF47459	2.09E-15	238	307	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.227	239	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-13	243	302	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-8	244	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-12	245	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MWRGTVSPAG EPAMDNWSWM PLHGGNGDGA MDSERSYGSG QHEEQDVALI SSHMQQQQLK 60 QSWAQSHMLM DTEVDGYAAT VPPIPSPSST TFCSNSDGSP DESSLLMLTG SATTTTSFLQ 120 PVEVSSLQSM PLSPIAYDDD HGLRFSSIDT ILNLDDLIAR QPHQEQARRK NGHEPRGAFR 180 PYVRHLSPRK NLKPGTCGQR AFRAAMSALT RMHVARLAHW QSVRMKMAAP PPPVGNSNYN 240 QLQHVLSERK RREKLNDSFK VLRTVLPPGT KKDRASTLIR ARDYVNTLKS KVSELEEKNK 300 MLVESQLHGD NGNEQDYNSG EQIEVEIIKT ASAEEESQEF RLKIAVGSGQ NAMVDSVVTI 360 LKSFKEIGDV SLMAMDTRSS SSGLGPGKDF QIAAVPFQAT V

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MWRGTVSPAG EPAMDNWSWM PLHGGNGDGA MDSERSYGSG QHEEQDVALI SSHMQQQQLK  60
QSWAQSHMLM DTEVDGYAAT VPPIPSPSST TFCSNSDGSP DESSLLMLTG SATTTTSFLQ  120
PVEVSSLQSM PLSPIAYDDD HGLRFSSIDT ILNLDDLIAR QPHQEQARRK NGHEPRGAFR  180
PYVRHLSPRK NLKPGTCGQR AFRAAMSALT RMHVARLAHW QSVRMKMAAP PPPVGNSNYN  240
QLQHVLSERK RREKLNDSFK VLRTVLPPGT KKDRASTLIR ARDYVNTLKS KVSELEEKNK  300
MLVESQLHGD NGNEQDYNSG EQIEVEIIKT ASAEEESQEF RLKIAVGSGQ NAMVDSVVTI  360
LKSFKEIGDV SLMAMDTRSS SSGLGPGKDF QIAAVPFQAT V

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	247	252	ERKRRE
2	248	253	RKRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809512.1	9e-99	putative transcription factor bHLH041 isoform X1
TrEMBL	A0A1E5UQ25	1e-100	A0A1E5UQ25_9POAL; Uncharacterized protein
STRING	Si024546m	9e-96	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2900	31	82