PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00078.1.g00270.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 355aa MW: 38394.1 Da PI: 9.6659

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00078.1.g00270.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25	3.3e-08	276	316	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L Zmw_sc00078.1.g00270.1.am.mk 276 ARVRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 316 699***************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.18	267	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.8E-14	272	328	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-12	272	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-13	273	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-5	277	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.98E-6	290	321	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MTDSELPATT TCRPLSCTDV RPNEQVQVLF DFSKKLENSS AERLFPSGAD HQTSRRCNSH 60 PVARIHQQTV GIGSRPAGRQ ANGACLRSGA VGLRPFMPVR VGRTSTDQRT GVHAAVDHAQ 120 SFGDRSLWST QLELMNAMLQ LEQLTAFADH GAMMMPSTPP SPCVQAPHYF TSSVPHMSGG 180 TNARAAYHDQ SSQQVTPPSS CNSSSNRSSE HTAQQAPPPP PCASGDGGGD AVGSSAMREM 240 IFRVAALQPV NIEPEMVRPP KRRNVRISTD PQSVAARVRR ERISERIRIL QRLVPGGTKM 300 DTASMLDEAI HYVKFLKTQV QSLERAAAAS GRRPATPHED NGAVAYTTAG RMHGQ

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MTDSELPATT TCRPLSCTDV RPNEQVQVLF DFSKKLENSS AERLFPSGAD HQTSRRCNSH  60
PVARIHQQTV GIGSRPAGRQ ANGACLRSGA VGLRPFMPVR VGRTSTDQRT GVHAAVDHAQ  120
SFGDRSLWST QLELMNAMLQ LEQLTAFADH GAMMMPSTPP SPCVQAPHYF TSSVPHMSGG  180
TNARAAYHDQ SSQQVTPPSS CNSSSNRSSE HTAQQAPPPP PCASGDGGGD AVGSSAMREM  240
IFRVAALQPV NIEPEMVRPP KRRNVRISTD PQSVAARVRR ERISERIRIL QRLVPGGTKM  300
DTASMLDEAI HYVKFLKTQV QSLERAAAAS GRRPATPHED NGAVAYTTAG RMHGQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	257	262	RPPKRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022683432.1	5e-82	transcription factor HEC1
TrEMBL	A0A0A8YXS6	2e-99	A0A0A8YXS6_ARUDO; Uncharacterized protein
STRING	Pavir.Fa00680.1.p	1e-82	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3103	36	82