PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00067.1.g00200.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ZF-HD

Protein Properties

Length: 390aa MW: 40986.3 Da PI: 6.8267

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00067.1.g00200.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	105.2	4e-33	189	244	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 v+Y+eClkNhAa++Gg+a+DGCgEfmps geeg+ +alkCaACgCHRnFHR+ev++ Zmw_sc00067.1.g00200.1.am.mk 189 VVKYRECLKNHAAAMGGNATDGCGEFMPS-GEEGSLEALKCAACGCHRNFHRKEVDD 244 589***********************9.999*******************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	6.5E-30	190	242	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	7.0E-24	191	243	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	8.7E-31	191	242	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	28.086	192	241	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.44E-17	289	359	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.0E-27	291	360	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	8.4E-26	300	356	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MLAPMAEAAE PGYLAPRPCF FVLTQQHGSS SSMFLCVWSQ ERRAKNRRGS MDLSGNQGEL 60 PIPMQAPASP NASGLVLLPS PPAAATEELG NNNNGTEALV LLPSPPAAAM EEEYGNNKNG 120 NEAAPVLLPS PPAAATEEEQ GNNNNGNEAP VLLPSPPAAA ATEEEESSGL KKPAAVSVTG 180 AIGTGAGPVV KYRECLKNHA AAMGGNATDG CGEFMPSGEE GSLEALKCAA CGCHRNFHRK 240 EVDDDAGHGN GCSYGHRFTD PYAAMHAPPP LHHHQLVNAV PLSAVHTAEP GARGSASSMK 300 RFRTKFSAEQ KARMLAFAER AGWRLTNVDE GAVQAFCQEI GVRRPVLKVW MHNNKYTLRS 360 KRLQAPPVAA AAAPLSPPPP PLLCLSHQAV

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MLAPMAEAAE PGYLAPRPCF FVLTQQHGSS SSMFLCVWSQ ERRAKNRRGS MDLSGNQGEL  60
PIPMQAPASP NASGLVLLPS PPAAATEELG NNNNGTEALV LLPSPPAAAM EEEYGNNKNG  120
NEAAPVLLPS PPAAATEEEQ GNNNNGNEAP VLLPSPPAAA ATEEEESSGL KKPAAVSVTG  180
AIGTGAGPVV KYRECLKNHA AAMGGNATDG CGEFMPSGEE GSLEALKCAA CGCHRNFHRK  240
EVDDDAGHGN GCSYGHRFTD PYAAMHAPPP LHHHQLVNAV PLSAVHTAEP GARGSASSMK  300
RFRTKFSAEQ KARMLAFAER AGWRLTNVDE GAVQAFCQEI GVRRPVLKVW MHNNKYTLRS  360
KRLQAPPVAA AAAPLSPPPP PLLCLSHQAV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	6e-23	298	355	16	73	ZF-HD homeobox family protein
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00258	DAP	Transfer from AT2G02540	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002449277.1	1e-67	zinc-finger homeodomain protein 4 isoform X1
Refseq	XP_021316696.1	1e-67	zinc-finger homeodomain protein 4 isoform X2
Refseq	XP_021316697.1	1e-67	zinc-finger homeodomain protein 4 isoform X2
TrEMBL	A0A1B6PR18	2e-66	A0A1B6PR18_SORBI; Uncharacterized protein
STRING	Sb05g007050.1	4e-67	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP815	35	145