PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00064.1.g00250.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 309aa MW: 35077 Da PI: 10.8972

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00064.1.g00250.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.9	1.7e-18	165	219	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq +Le+ F+++++++ +++ LA++l+L rqV vWFqNrRa++k Zmw_sc00064.1.g00250.1.am.mk 165 RKKLRLTKEQSAVLEDRFKEHSTLNPKQKVALANQLNLRPRQVEVWFQNRRARRK 219 78889************************************************98 PP
2	HD-ZIP_I/II	116.9	1.2e-37	165	253	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 +kk+rl+keq+++LE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRAR k+kq E+d+e Lkr y++l+een+rL+ Zmw_sc00064.1.g00250.1.am.mk 165 RKKLRLTKEQSAVLEDRFKEHSTLNPKQKVALANQLNLRPRQVEVWFQNRRARRKLKQAEVDCELLKRFYETLTEENRRLH 245 69***************************************************************************** PP HD-ZIP_I/II 82 keveeLree 90 e ++Lr + Zmw_sc00064.1.g00250.1.am.mk 246 CELQRLR-A 253 ****9.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.2E-18	151	222	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.006	161	221	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.6E-18	163	223	IPR009057	Homeodomain-like
SMART	SM00389	5.6E-16	163	225	IPR001356	Homeobox domain
CDD	cd00086	1.81E-14	165	222	No hit	No description
Pfam	PF00046	6.0E-16	165	219	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	196	219	IPR017970	Homeobox, conserved site
Pfam	PF02183	1.3E-7	221	254	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	1.0E-15	221	264	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MHLRPSTTPQ RRGAMVDGTR KRKVRRRNWI RWLDERKRLI RAARRPSRMA TGKRGRGGSE 60 RHRTRQREEY MEHEEVGLAL GLSLGSGHHW FKEQPPPPPS QLCALEPSMS ISIRADDGSL 120 PTQARPLNGA VKREFPVEDD DGPMDRGLYS VVSSAADDDE GCNSRKKLRL TKEQSAVLED 180 RFKEHSTLNP KQKVALANQL NLRPRQVEVW FQNRRARRKL KQAEVDCELL KRFYETLTEE 240 NRRLHCELQR LRALNHPHPA AFFMPGAALS ICPSCERLAS TPGAATATDR PKATGPAPLL 300 SNFTKSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	20	37	KRKVRRRNWIRWLDERKR
2	163	169	SRKKLRL
3	213	221	RRARRKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004983488.1	1e-108	homeobox-leucine zipper protein HOX15
Swissprot	Q7G737	2e-70	HOX15_ORYSJ; Homeobox-leucine zipper protein HOX15
TrEMBL	K4AE82	1e-107	K4AE82_SETIT; Uncharacterized protein
STRING	Si037189m	1e-108	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2055	36	98

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]