PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00063.1.g00370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | FAR1 | ||||||||
Protein Properties | Length: 300aa MW: 33402.9 Da PI: 6.4251 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 79.5 | 6e-25 | 86 | 176 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngei.tkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkw 76 +fYneYA+++GF r+ +s++sk ++e+ ++++fvCs+eg ++++ + + +++r+r++ r gC+a+++v +e +++w Zmw_sc00063.1.g00370.1.es.mkhc 86 EFYNEYARRLGFPFRVGRSRRSKGTEEVlVMKRFVCSREGMYKKKQPSsdDATRKRERVSMRDGCNAMMEVVRE-SDHW 163 6*********************8777652789********98887766557888999***************99.9*** PP FAR1 77 evtkleleHnHel 89 +v+kle+ HnH l Zmw_sc00063.1.g00370.1.es.mkhc 164 VVSKLEKAHNHGL 176 ***********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.8E-22 | 86 | 176 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.3E-7 | 269 | 299 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MIMEGARSEG DELIADYVDC LMSLDTSARS HQNDSIVLGD SIVEGAPSLS VGGAAEPEVM 60 KDFALGDDPN EPVLGMVFES DEAAKEFYNE YARRLGFPFR VGRSRRSKGT EEVLVMKRFV 120 CSREGMYKKK QPSSDDATRK RERVSMRDGC NAMMEVVRES DHWVVSKLEK AHNHGLGTCT 180 MVGYLRARGL LVSSEKVTMV GPDDMSFLRH NVLGEGGDAQ GLLDYLKKMQ ANDPAFFHAI 240 QVDKNGCVVN AFWADARAKA AYRHFGDAVT FDTTYKKNKY MMPFVTFTGV NHHLQPVIFG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012700148.1 | 1e-180 | protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_012700149.1 | 1e-180 | protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_012700150.1 | 1e-180 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A368QD21 | 1e-179 | A0A368QD21_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Cb01881.1.p | 1e-180 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |