PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00063.1.g00370.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family FAR1
Protein Properties Length: 300aa    MW: 33402.9 Da    PI: 6.4251
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00063.1.g00370.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR179.56e-2586176189
                            FAR1   1 kfYneYAkevGFsvrkskskkskrngei.tkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkw 76 
                                     +fYneYA+++GF  r+ +s++sk ++e+ ++++fvCs+eg  ++++ +  + +++r+r++ r gC+a+++v +e +++w
  Zmw_sc00063.1.g00370.1.es.mkhc  86 EFYNEYARRLGFPFRVGRSRRSKGTEEVlVMKRFVCSREGMYKKKQPSsdDATRKRERVSMRDGCNAMMEVVRE-SDHW 163
                                     6*********************8777652789********98887766557888999***************99.9*** PP

                            FAR1  77 evtkleleHnHel 89 
                                     +v+kle+ HnH l
  Zmw_sc00063.1.g00370.1.es.mkhc 164 VVSKLEKAHNHGL 176
                                     ***********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-2286176IPR004330FAR1 DNA binding domain
PfamPF105514.3E-7269299IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MIMEGARSEG DELIADYVDC LMSLDTSARS HQNDSIVLGD SIVEGAPSLS VGGAAEPEVM  60
KDFALGDDPN EPVLGMVFES DEAAKEFYNE YARRLGFPFR VGRSRRSKGT EEVLVMKRFV  120
CSREGMYKKK QPSSDDATRK RERVSMRDGC NAMMEVVRES DHWVVSKLEK AHNHGLGTCT  180
MVGYLRARGL LVSSEKVTMV GPDDMSFLRH NVLGEGGDAQ GLLDYLKKMQ ANDPAFFHAI  240
QVDKNGCVVN AFWADARAKA AYRHFGDAVT FDTTYKKNKY MMPFVTFTGV NHHLQPVIFG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700148.11e-180protein FAR1-RELATED SEQUENCE 5
RefseqXP_012700149.11e-180protein FAR1-RELATED SEQUENCE 5
RefseqXP_012700150.11e-180protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A368QD211e-179A0A368QD21_SETIT; Uncharacterized protein
STRINGPavir.Cb01881.1.p1e-180(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967