PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00062.1.g00470.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 208aa    MW: 23061.9 Da    PI: 7.093
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00062.1.g00470.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.3e-19115167456
                                   -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   +++++ eq+++Le+ Fe  +++  e++++LA+ lgL+ rqV +WFqNrRa++k
  Zmw_sc00062.1.g00470.1.am.mk 115 KRRLSVEQVRTLERSFEVANKLEPERKAQLARALGLQPRQVAIWFQNRRARWK 167
                                   44799***********************************************9 PP
2HD-ZIP_I/II128.33.1e-41113203191
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   e+krrls eqv++LE+sFe  +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aL+r++da ++en++L 
  Zmw_sc00062.1.g00470.1.am.mk 113 ERKRRLSVEQVRTLERSFEVANKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALRRQLDAARAENDALL 193
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLreel 91 
                                   +++++L++e+
  Zmw_sc00062.1.g00470.1.am.mk 194 AQNKKLHAEV 203
                                   ******9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-2090170IPR009057Homeodomain-like
SuperFamilySSF466891.03E-19106171IPR009057Homeodomain-like
PROSITE profilePS5007117.2109169IPR001356Homeobox domain
SMARTSM003892.5E-18112173IPR001356Homeobox domain
CDDcd000861.32E-15114170No hitNo description
PfamPF000463.5E-16115167IPR001356Homeobox domain
PRINTSPR000312.2E-6140149IPR000047Helix-turn-helix motif
PROSITE patternPS000270144167IPR017970Homeobox, conserved site
PRINTSPR000312.2E-6149165IPR000047Helix-turn-helix motif
PfamPF021835.8E-10169203IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MATNGMAPSF FPANFLLQMQ QPLPHHHHLH PQQQAADHPH HHDHEHHLLA PPPPSLSPFL  60
HDFAGAMAPP PPMYPPDAVS DDLHAAEPQQ GGGAASDDEE GSAAAGGCGG AGERKRRLSV  120
EQVRTLERSF EVANKLEPER KAQLARALGL QPRQVAIWFQ NRRARWKTKQ LEKDYDALRR  180
QLDAARAEND ALLAQNKKLH AEVLFFVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112117ERKRRL
2161169RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002467274.11e-84homeobox-leucine zipper protein HOX23
SwissprotA2Z7343e-58HOX23_ORYSI; Homeobox-leucine zipper protein HOX23
SwissprotQ94GL53e-58HOX23_ORYSJ; Homeobox-leucine zipper protein HOX23
TrEMBLA0A0A9NZZ85e-94A0A0A9NZZ8_ARUDO; Uncharacterized protein
TrEMBLA0A1E5V6C79e-93A0A1E5V6C7_9POAL; Homeobox-leucine zipper protein HOX23
STRINGPavir.Ia02126.1.p9e-93(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]