PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00060.1.g00620.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 436aa    MW: 46449.9 Da    PI: 9.048
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00060.1.g00620.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94.1e-067395123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  y+C+ Cgk F r  nL+ H r H
  Zmw_sc00060.1.g00620.1.am.mk 73 YVCEVCGKGFQRDQNLQLHRRGH 95
                                  9********************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.7E-87295No hitNo description
SMARTSM003550.00817395IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.0E-67395IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.8227395IPR007087Zinc finger, C2H2
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
SMARTSM0035538115145IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.1E-4138170IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.7E-8145170No hitNo description
SMARTSM00355250150170IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MMLKDLAAIQ QQQQLAADES MSNLTSASGD LASVSSYPLP PPAKKKRSLP GNPDPDAEVI  60
ALSPRTLMAT NRYVCEVCGK GFQRDQNLQL HRRGHNLPWK LKQRNPKEAV RKKVYVCPEP  120
GCVHHDPARA LGDLTGIKKH FSRKHGEKKW KCDRCSKRYA VHSDWKAHSK VCGTREYRCD  180
CGNLFSRHAS SFFSSLRDSF ITHRAFCDAL AEESARAVTA AAAMAGQQLP SVLDPSQPFA  240
QSWLTAQQQM ELAGAANSSV VFSSATRLDQ EYVGSSTPES STQPAGLTFG FSPSSTTGTA  300
SATHMSATAL LQKAAQMGAT LSRPSTHGQM ASTHSTSTGT TTNATTASPP PAAAASTSNV  360
PSTCLGSGAS HFGADKRSDH EAGGAGGGND NLTRDFLGLR AFSHGDILSI AGFDPCMSSA  420
AAYEQGRHTN SKPWHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-30146216364Zinc finger protein JACKDAW
5b3h_F4e-30146216364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199112KLKQRNPKEAVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008655722.10.0protein indeterminate-domain 7
RefseqXP_008655723.10.0protein indeterminate-domain 7
RefseqXP_015622491.10.0protein indeterminate-domain 7
SwissprotQ8H1F51e-117IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A3L6R1260.0A0A3L6R126_PANMI; Uncharacterized protein
STRINGORGLA01G0057600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]