PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00058.1.g00170.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

FAR1

Protein Properties

Length: 351aa MW: 38940.3 Da PI: 7.5815

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00058.1.g00170.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73	6.7e-23	83	174	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrng..eitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevt 79 fYn+YA++ GF +r+++s++++r+g ++++fvC keg+++++ + ++k++r+r + r gC a+++v ++ +kw+vt Zmw_sc00058.1.g00170.1.sm.mk 83 FYNAYASRSGFGIRVARSRSERRKGveVLVMKRFVCLKEGHHKKKPAEpSNKKQRKRLSIRDGCPAMMEVVRRGLDKWVVT 163 *************9999886665216789*******99998878899999********************* PP FAR1 80 kleleHnHela 90 kl+leH+H ++ Zmw_sc00058.1.g00170.1.sm.mk 164 KLVLEHTHVIV 174 ******875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.3E-21	83	174	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MENSSSEDDE LVEDYIDVED DTGTENVDQG TAVLASQIDC VGPSEGSMPP VGNELLMAAG 60 VVGTNDEPHV GMEFESDAAA RAFYNAYASR SGFGIRVARS RSERRKGVEV LVMKRFVCLK 120 EGHHKKKPAE PSNKKQRKRL SIRDGCPAMM EVVRRGLDKW VVTKLVLEHT HVIVSADRVR 180 EVQLRCLSGI YTRAAFEAFQ VELIEALQHY AVKVEDGPYT KYYVERDGDP PTRHTVFYNI 240 AEKKAWHVLG VFILAGVITL PDSCVTKRWT KKAKTGPEVI GLNHGHAKSS SDSVTSRYND 300 LVRDAMKCAE KGSVSTGTFR VAKEVLSKAF MEIKALSEKM NRDVAQGVDS R

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MENSSSEDDE LVEDYIDVED DTGTENVDQG TAVLASQIDC VGPSEGSMPP VGNELLMAAG  60
VVGTNDEPHV GMEFESDAAA RAFYNAYASR SGFGIRVARS RSERRKGVEV LVMKRFVCLK  120
EGHHKKKPAE PSNKKQRKRL SIRDGCPAMM EVVRRGLDKW VVTKLVLEHT HVIVSADRVR  180
EVQLRCLSGI YTRAAFEAFQ VELIEALQHY AVKVEDGPYT KYYVERDGDP PTRHTVFYNI  240
AEKKAWHVLG VFILAGVITL PDSCVTKRWT KKAKTGPEVI GLNHGHAKSS SDSVTSRYND  300
LVRDAMKCAE KGSVSTGTFR VAKEVLSKAF MEIKALSEKM NRDVAQGVDS R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	137	KKPAEPSNKKQRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025810978.1	1e-107	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025810979.1	1e-107	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A3L6PBS6	0.0	A0A3L6PBS6_PANMI; Uncharacterized protein
STRING	Pavir.J21189.1.p	1e-109	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967