PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00050.1.g00390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NF-YB | ||||||||
Protein Properties | Length: 219aa MW: 23184.5 Da PI: 6.5125 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 184.5 | 8.3e-58 | 22 | 117 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yv+p Zmw_sc00050.1.g00390.1.sm.mk 22 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVDP 102 89******************************************************************************* PP NF-YB 83 lkvylkkyrelegek 97 lk yl+k+re+ege+ Zmw_sc00050.1.g00390.1.sm.mk 103 LKHYLHKFREIEGER 117 *************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 8.5E-55 | 19 | 121 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.17E-40 | 24 | 132 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.0E-28 | 27 | 91 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 5.6E-20 | 55 | 73 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 58 | 74 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 5.6E-20 | 74 | 92 | No hit | No description |
PRINTS | PR00615 | 5.6E-20 | 93 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MPESDNDSGG PSNAGGDLSS SREQDRFLPI ANVSRIMKKA LPANAKISKD AKETVQECVS 60 EFISFITGEA SDKCQREKRK TINGDDLLWA MTTLGFEEYV DPLKHYLHKF REIEGERAAA 120 SSGGGSTAAP QQQQSDMSRN VNAGGVAYGG YGGPGAGGMM MMMGQPPMYG GSPQQQQQQQ 180 QQQQHQLQHH MATGGGGGYG HLGGGSSSAS SGLGRQDRA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 9e-48 | 20 | 112 | 5 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631006.1 | 1e-84 | nuclear transcription factor Y subunit B-8 | ||||
Swissprot | Q75IZ7 | 8e-86 | NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8 | ||||
TrEMBL | A0A0E0NWH3 | 3e-84 | A0A0E0NWH3_ORYRU; Uncharacterized protein | ||||
TrEMBL | A0A287XNK1 | 4e-84 | A0A287XNK1_HORVV; Uncharacterized protein | ||||
TrEMBL | F2DAQ6 | 3e-84 | F2DAQ6_HORVV; Predicted protein | ||||
STRING | MLOC_5897.1 | 4e-85 | (Hordeum vulgare) | ||||
STRING | ORUFI03G21970.1 | 4e-85 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 |
Publications ? help Back to Top | |||
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