PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00045.1.g00270.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 300aa    MW: 32462.5 Da    PI: 11.4998
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00045.1.g00270.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.47.3e-29201631128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk. 79 
                                   lppGfrF+Ptdeelv +yL++k+ g +l++++vi+ v d+y + Pwd+p    a++ e yfF+ r  +     r++     
  Zmw_sc00045.1.g00270.1.am.mk  20 LPPGFRFKPTDEELVLQYLRRKALGVPLPAADVITVVrDLYGLVPWDIP---GASDGEKYFFAIRPAAGVDRPRAKT--Gg 95 
                                   79*********************************999***********...3467899*****9998765444444..23 PP

                           NAM  80 ....sgyWkatgkdkevlsk....kgelvglkktLvfy...........kgrapkgektdWvmheyrl 128
                                       sg+Wk  gk+++v+      ++ lvg k+ L+f            +++a  g  t Wvmheyrl
  Zmw_sc00045.1.g00270.1.am.mk  96 ampaSGRWKPEGKERPVVLPrpcgGSLLVGAKRALAFAprrrgkkstnkQASAAAGLTTGWVMHEYRL 163
                                   34459*************9989877778**********9998887776556788888*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-3216167IPR003441NAC domain
PROSITE profilePS5100535.27820181IPR003441NAC domain
PfamPF023652.4E-1821163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MERAPVLVRH AGGVATLRQL PPGFRFKPTD EELVLQYLRR KALGVPLPAA DVITVVRDLY  60
GLVPWDIPGA SDGEKYFFAI RPAAGVDRPR AKTGGAMPAS GRWKPEGKER PVVLPRPCGG  120
SLLVGAKRAL AFAPRRRGKK STNKQASAAA GLTTGWVMHE YRLATALLPK NCHQICSSLH  180
DQQRQSSIIF MRESWLRLGG GRRRVGGVSG LPEEPAAAAA EEATSCSPGR RRHRAAPHDA  240
TVAVRGVVRQ QLRHGWLGPG RRGQQLASEL DKRPAATQGY EGRPSTAMLA ACCCRLSKRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-181916314140Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820406.13e-67NAC domain-containing protein 18-like isoform X1
TrEMBLA0A2S3I4948e-66A0A2S3I494_9POAL; Uncharacterized protein
STRINGSi014408m4e-66(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118183140