PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00045.1.g00090.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family BBR-BPC
Protein Properties Length: 386aa    MW: 42675.4 Da    PI: 10.5332
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00045.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind329.97.1e-10113431297
                     GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki..............rernlalsekkaavaerd........ 57 
                                   mdddgs   rn+g+ye     k nlglqlms +a +rd+k               +   +  +++++++++rd        
  Zmw_sc00045.1.g00090.1.am.mk   1 MDDDGSLGiRNWGFYETV---KGNLGLQLMSPVApDRDTKSllpnstflhhhghqNAPGQQHHQQQHSHQPRDfgagggas 78 
                                   9*****999******988...**********9999******99999999987632111222344555566777******** PP

                     GAGA_bind  58 ...........maflqrdkalaernkalverdnkllalllvensla...........salpvgvqvlsgtksidslqq..l 114
                                              m+f++++++l+   ++   +++k+l+  ++ +               ++p+++q++++++++ ++ q   
  Zmw_sc00045.1.g00090.1.am.mk  79 aampteprpvhMDFTRNEAWLHP-SQHQRAHEQKVLHFGPAGHVGHpghavhpghvvRHHPASYQMMPDARHALQMMQppE 158
                                   ***********************.8888889999999999988777888999**999999*******99988655544232 PP

                     GAGA_bind 115 se.....pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskae 190
                                          pql+++  +  +ee  +    +e ++ +++++ +kkrq  ++pk++k kk+kk   +++++ ++++  +r++ +
  Zmw_sc00045.1.g00090.1.am.mk 159 -AqsqpqPQLQPQEHPPCKEEGASPAL-VEDHSMVRNEQPVKKRQLRRQPKSPKPKKPKK-AVVPREDGAPNRPAPRARGP 236
                                   .13567788888888866666555555.5556667777777889****************.67888888888877****** PP

                     GAGA_bind 191 kksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLek 271
                                   kk +++v+ng+++D s++P+PvCsCtG+++qCY+WG+GGWqSaCCtt+iS+yPLP+stkrrgaRiagrKmSqgafkk+Lek
  Zmw_sc00045.1.g00090.1.am.mk 237 KKAVGMVINGIDVDLSRIPTPVCSCTGSPQQCYRWGAGGWQSACCTTSISTYPLPMSTKRRGARIAGRKMSQGAFKKVLEK 317
                                   ********************************************************************************* PP

                     GAGA_bind 272 LaaeGydlsnpvDLkdhWAkHGtnkf 297
                                   L++eGy+l+np+DLk++WAkHGtnkf
  Zmw_sc00045.1.g00090.1.am.mk 318 LSGEGYNLNNPIDLKTFWAKHGTNKF 343
                                   *************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012263.2E-1661343IPR010409GAGA-binding transcriptional activator
PfamPF062171.2E-1131343IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MDDDGSLGIR NWGFYETVKG NLGLQLMSPV APDRDTKSLL PNSTFLHHHG HQNAPGQQHH  60
QQQHSHQPRD FGAGGGASAA MPTEPRPVHM DFTRNEAWLH PSQHQRAHEQ KVLHFGPAGH  120
VGHPGHAVHP GHVVRHHPAS YQMMPDARHA LQMMQPPEAQ SQPQPQLQPQ EHPPCKEEGA  180
SPALVEDHSM VRNEQPVKKR QLRRQPKSPK PKKPKKAVVP REDGAPNRPA PRARGPKKAV  240
GMVINGIDVD LSRIPTPVCS CTGSPQQCYR WGAGGWQSAC CTTSISTYPL PMSTKRRGAR  300
IAGRKMSQGA FKKVLEKLSG EGYNLNNPID LKTFWAKHGT NKFAAGLLAR DTLGERAGLL  360
TMLDFDEERK GGKKGKRAVG WSRWLE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002461880.11e-160protein Barley B recombinant
RefseqXP_021309578.11e-160protein Barley B recombinant
SwissprotQ8GUC31e-136BBR_HORVU; Protein Barley B recombinant
TrEMBLC5X4B51e-159C5X4B5_SORBI; Uncharacterized protein
STRINGSb02g009750.11e-160(Sorghum bicolor)
STRINGSb02g009782.11e-160(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697