PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00044.1.g00500.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 322aa MW: 35210.9 Da PI: 9.3872

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00044.1.g00500.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	94.9	5.6e-30	82	193	1	98
EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvk 70 f+kv tpsdv+k++rlv+pk++ae++ +++ ++ l++ed++g+ W+++++y+++s++yv+tkGW++Fvk Zmw_sc00044.1.g00500.1.am.mk 82 FEKVVTPSDVGKLNRLVIPKQHAERYfaalgsaaseaASNEGKGLVLSFEDREGKAWRFRYSYWNSSQSYVMTKGWSRFVK 162 99*****************************999988888999******************************** PP HHT--TT-EEEEEE-.SS..SEE..EEEEE- CS B3 71 angLkegDfvvFkld.gr..sefelvvkvfr 98 +++L +gD+v F + g+ ++++++ ++r Zmw_sc00044.1.g00500.1.am.mk 163 EKRLGAGDTVAFARGtGDaaARGRFFIDFCR 193 **********9443332455666666666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.6E-37	78	179	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.57E-28	79	177	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.89E-26	80	174	No hit	No description
PROSITE profile	PS50863	14.17	82	195	IPR003340	B3 DNA binding domain
Pfam	PF02362	8.7E-28	82	194	IPR003340	B3 DNA binding domain
SMART	SM01019	1.6E-20	82	195	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MLATDLIALQ SRSCSHPPSV EEGEEIPIVK VNSYSTQLEQ QLESRGVERV PMEFGRIAAA 60 QEDSERARGG GGAAWLEREH MFEKVVTPSD VGKLNRLVIP KQHAERYFAA LGSAASEAAS 120 NEGKGLVLSF EDREGKAWRF RYSYWNSSQS YVMTKGWSRF VKEKRLGAGD TVAFARGTGD 180 AAARGRFFID FCRRRQDVAF LQPSALQRLP LPSVPISCPW PQEYGAYNPA AAPNRHVLFL 240 RPQMPSAVVL TSVPVRVAAS AVEATRSKRV RLFGVNLDSP PVMEDKSRAT GTVSTFLQLP 300 SPSSSTSSST AGKDLCSLDL GL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	8e-52	77	194	3	113	B3 domain-containing transcription factor NGA1
5os9_B	8e-52	77	194	3	113	B3 domain-containing transcription factor NGA1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004983810.1	1e-122	putative B3 domain-containing protein Os10g0537100
Swissprot	Q8LNN8	2e-92	Y1071_ORYSJ; Putative B3 domain-containing protein Os10g0537100
TrEMBL	A0A1E5V5B2	1e-126	A0A1E5V5B2_9POAL; Putative B3 domain-containing protein
STRING	Si039972m	1e-122	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP583	37	168

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]