PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00038.1.g00270.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YB

Protein Properties

Length: 253aa MW: 27056.2 Da PI: 4.6725

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00038.1.g00270.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	46.6	8.1e-15	35	128	6	92
NF-YB 6 rflPianvsrimkkvlP.......anakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfe 77 ++lP a v r++k l a+ + +da e + fi ++++ a+d c++ kr+tin+dd+l al ++ f Zmw_sc00038.1.g00270.1.sm.mkhc 35 EELPKAIVRRLVKDKLAhiaggegAEVIVNRDAMAAFAESARIFIHYLSATANDMCKESKRQTINADDVLKALDEMEFS 113 5799999999999988622222112345789********************************************** PP NF-YB 78 dyveplkvylkkyre 92 ++veplk+ l+ r Zmw_sc00038.1.g00270.1.sm.mkhc 114 EFVEPLKTSLQDKRS 128 *******998886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.6E-30	32	155	IPR009072	Histone-fold
Pfam	PF00808	2.0E-9	36	107	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	4.0E-25	37	150	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MADEATNESE PQPQAAGTQD KPAPAAAPMT EAEVEELPKA IVRRLVKDKL AHIAGGEGAE 60 VIVNRDAMAA FAESARIFIH YLSATANDMC KESKRQTINA DDVLKALDEM EFSEFVEPLK 120 TSLQDKRSEA SKKQKEKRRK LNEEALPEKG NDPVDDVENA SQKPPLLNHL NHPPSPDHPP 180 PPVAGPLGFL EFSADPIRRC ILLSEWYLFL AVAAAGEEAI GAGTTAASGG TENPHGSKAC 240 RDAGETTGGG KDS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025801207.1	1e-75	DNA polymerase epsilon subunit 3
TrEMBL	A0A0A9GDS4	9e-76	A0A0A9GDS4_ARUDO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10414	37	44