PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00036.1.g00210.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 264aa    MW: 28787.2 Da    PI: 9.0372
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00036.1.g00210.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.68.2e-17941691899
                                   --HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                            B3  18 lpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                                   +p  f  e+ ++    ++ ++l+ +sg +W+v l  + +s++  +t+GWkeF+ ++ L +g f+vF++dg+sef   v vf
  Zmw_sc00036.1.g00210.1.sm.mk  94 IPPAFH-EYvKEA--PDRVVSLKGPSGHTWKVVL--TSGSQGLSFTQGWKEFACDHSLLAGHFMVFTYDGQSEF--SVDVF 167
                                   777776.552433..34589**************..*********************************99999..99999 PP

                                   -S CS
                            B3  98 rk 99 
                                   ++
  Zmw_sc00036.1.g00210.1.sm.mk 168 SA 169
                                   86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-1968171IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.6E-1169170IPR003340B3 DNA binding domain
PROSITE profilePS5086312.84477170IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-1791170IPR015300DNA-binding pseudobarrel domain
CDDcd100179.16E-1594168No hitNo description
PfamPF023623.9E-1494169IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MGRKNPQGGS GAAPAAAATE RGKGKRTKEG SAGRKERRSG REQRKVTEAA RGEEEEEEGG  60
APVAAGEQFF KVYFPEQSAV RLVSVSFSAS PPKIPPAFHE YVKEAPDRVV SLKGPSGHTW  120
KVVLTSGSQG LSFTQGWKEF ACDHSLLAGH FMVFTYDGQS EFSVDVFSAS GVKDKAAPNV  180
EPRKEPVIKQ EEEQDCVVDM DALDTPQVSA DLPPVEVDRR NTRKRVRQMN DAMEGDTALK  240
TKGQSSVQKK HEKRKPKAAA EYPV
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44613766